153 related articles for article (PubMed ID: 16638137)
1. RNAmute: RNA secondary structure mutation analysis tool.
Churkin A; Barash D
BMC Bioinformatics; 2006 Apr; 7():221. PubMed ID: 16638137
[TBL] [Abstract][Full Text] [Related]
2. An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptimal folding solutions.
Churkin A; Barash D
BMC Bioinformatics; 2008 Apr; 9():222. PubMed ID: 18445289
[TBL] [Abstract][Full Text] [Related]
3. Deleterious mutation prediction in the secondary structure of RNAs.
Barash D
Nucleic Acids Res; 2003 Nov; 31(22):6578-84. PubMed ID: 14602917
[TBL] [Abstract][Full Text] [Related]
4. Mutational analysis in RNAs: comparing programs for RNA deleterious mutation prediction.
Barash D; Churkin A
Brief Bioinform; 2011 Mar; 12(2):104-14. PubMed ID: 21422070
[TBL] [Abstract][Full Text] [Related]
5. The RNAmute web server for the mutational analysis of RNA secondary structures.
Churkin A; Gabdank I; Barash D
Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W92-9. PubMed ID: 21478166
[TBL] [Abstract][Full Text] [Related]
6. Second eigenvalue of the Laplacian matrix for predicting RNA conformational switch by mutation.
Barash D
Bioinformatics; 2004 Aug; 20(12):1861-9. PubMed ID: 14988109
[TBL] [Abstract][Full Text] [Related]
7. RNA-TVcurve: a Web server for RNA secondary structure comparison based on a multi-scale similarity of its triple vector curve representation.
Li Y; Shi X; Liang Y; Xie J; Zhang Y; Ma Q
BMC Bioinformatics; 2017 Jan; 18(1):51. PubMed ID: 28109252
[TBL] [Abstract][Full Text] [Related]
8. IndelsRNAmute: predicting deleterious multiple point substitutions and indels mutations.
Churkin A; Ponty Y; Barash D
BMC Bioinformatics; 2022 Oct; 23(Suppl 8):424. PubMed ID: 36241988
[TBL] [Abstract][Full Text] [Related]
9. RNAexinv: An extended inverse RNA folding from shape and physical attributes to sequences.
Avihoo A; Churkin A; Barash D
BMC Bioinformatics; 2011 Aug; 12():319. PubMed ID: 21813013
[TBL] [Abstract][Full Text] [Related]
10. Spectral decomposition for the search and analysis of RNA secondary structure.
Barash D
J Comput Biol; 2004; 11(6):1169-74. PubMed ID: 15662204
[TBL] [Abstract][Full Text] [Related]
11. Assemble: an interactive graphical tool to analyze and build RNA architectures at the 2D and 3D levels.
Jossinet F; Ludwig TE; Westhof E
Bioinformatics; 2010 Aug; 26(16):2057-9. PubMed ID: 20562414
[TBL] [Abstract][Full Text] [Related]
12. RNAstructure: software for RNA secondary structure prediction and analysis.
Reuter JS; Mathews DH
BMC Bioinformatics; 2010 Mar; 11():129. PubMed ID: 20230624
[TBL] [Abstract][Full Text] [Related]
13. Sequence and proposed secondary structure of the Tetrahymena thermophila U3-snRNA.
Orum H; Nielsen H; Engberg J
Nucleic Acids Res; 1993 May; 21(10):2511. PubMed ID: 8506144
[No Abstract] [Full Text] [Related]
14. Tetrahymena telomerase protein p65 induces conformational changes throughout telomerase RNA (TER) and rescues telomerase reverse transcriptase and TER assembly mutants.
Berman AJ; Gooding AR; Cech TR
Mol Cell Biol; 2010 Oct; 30(20):4965-76. PubMed ID: 20713447
[TBL] [Abstract][Full Text] [Related]
15. Efficient algorithms for probing the RNA mutation landscape.
Waldispühl J; Devadas S; Berger B; Clote P
PLoS Comput Biol; 2008 Aug; 4(8):e1000124. PubMed ID: 18688270
[TBL] [Abstract][Full Text] [Related]
16. 4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing.
Seibel PN; Müller T; Dandekar T; Schultz J; Wolf M
BMC Bioinformatics; 2006 Nov; 7():498. PubMed ID: 17101042
[TBL] [Abstract][Full Text] [Related]
17. Using reliability information to annotate RNA secondary structures.
Zuker M; Jacobson AB
RNA; 1998 Jun; 4(6):669-79. PubMed ID: 9622126
[TBL] [Abstract][Full Text] [Related]
18. A tertiary interaction in the Tetrahymena intron contributes to selection of the 5' splice site.
Downs WD; Cech TR
Genes Dev; 1994 May; 8(10):1198-211. PubMed ID: 7926724
[TBL] [Abstract][Full Text] [Related]
19. PseudoViewer: automatic visualization of RNA pseudoknots.
Han K; Lee Y; Kim W
Bioinformatics; 2002; 18 Suppl 1():S321-8. PubMed ID: 12169562
[TBL] [Abstract][Full Text] [Related]
20. A novel class of nucleolar RNAs from Tetrahymena.
Nielsen H; Orum H; Engberg J
FEBS Lett; 1992 Aug; 307(3):337-42. PubMed ID: 1644191
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]