148 related articles for article (PubMed ID: 16685715)
21. Annealing contour Monte Carlo algorithm for structure optimization in an off-lattice protein model.
Liang F
J Chem Phys; 2004 Apr; 120(14):6756-63. PubMed ID: 15267570
[TBL] [Abstract][Full Text] [Related]
22. Bayesian phylogeny analysis via stochastic approximation Monte Carlo.
Cheon S; Liang F
Mol Phylogenet Evol; 2009 Nov; 53(2):394-403. PubMed ID: 19589389
[TBL] [Abstract][Full Text] [Related]
23. MUMBO: a protein-design approach to crystallographic model building and refinement.
Stiebritz MT; Muller YA
Acta Crystallogr D Biol Crystallogr; 2006 Jun; 62(Pt 6):648-58. PubMed ID: 16699192
[TBL] [Abstract][Full Text] [Related]
24. Computational protein design with side-chain conformational entropy.
Sciretti D; Bruscolini P; Pelizzola A; Pretti M; Jaramillo A
Proteins; 2009 Jan; 74(1):176-91. PubMed ID: 18618711
[TBL] [Abstract][Full Text] [Related]
25. Dead-end elimination with backbone flexibility.
Georgiev I; Donald BR
Bioinformatics; 2007 Jul; 23(13):i185-94. PubMed ID: 17646295
[TBL] [Abstract][Full Text] [Related]
26. Grand canonical free-energy calculations of protein-ligand binding.
Clark M; Meshkat S; Wiseman JS
J Chem Inf Model; 2009 Apr; 49(4):934-43. PubMed ID: 19309088
[TBL] [Abstract][Full Text] [Related]
27. A search algorithm for fixed-composition protein design.
Hom GK; Mayo SL
J Comput Chem; 2006 Feb; 27(3):375-8. PubMed ID: 16380943
[TBL] [Abstract][Full Text] [Related]
28. Monte Carlo docking with ubiquitin.
Cummings MD; Hart TN; Read RJ
Protein Sci; 1995 May; 4(5):885-99. PubMed ID: 7663344
[TBL] [Abstract][Full Text] [Related]
29. Polarizable protein packing.
Ng AH; Snow CD
J Comput Chem; 2011 May; 32(7):1334-44. PubMed ID: 21264879
[TBL] [Abstract][Full Text] [Related]
30. A similarity matrix-based hybrid algorithm for the contact map overlaps problem.
Lu H; Yang G; Yeung LF
Comput Biol Med; 2011 May; 41(5):247-52. PubMed ID: 21439563
[TBL] [Abstract][Full Text] [Related]
31. Ensemble docking of multiple protein structures: considering protein structural variations in molecular docking.
Huang SY; Zou X
Proteins; 2007 Feb; 66(2):399-421. PubMed ID: 17096427
[TBL] [Abstract][Full Text] [Related]
32. New shooting algorithms for transition path sampling: centering moves and varied-perturbation sizes for improved sampling.
Rowley CN; Woo TK
J Chem Phys; 2009 Dec; 131(23):234102. PubMed ID: 20025309
[TBL] [Abstract][Full Text] [Related]
33. Gibbs adsorption isotherm combined with Monte Carlo sampling to see action of cosolutes on protein folding.
Harries D; Parsegian VA
Proteins; 2004 Nov; 57(2):311-21. PubMed ID: 15340918
[TBL] [Abstract][Full Text] [Related]
34. Reference energy extremal optimization: a stochastic search algorithm applied to computational protein design.
Zhang N; Zeng C
J Comput Chem; 2008 Aug; 29(11):1762-71. PubMed ID: 18351599
[TBL] [Abstract][Full Text] [Related]
35. The performance of ZDOCK and ZRANK in rounds 6-11 of CAPRI.
Wiehe K; Pierce B; Tong WW; Hwang H; Mintseris J; Weng Z
Proteins; 2007 Dec; 69(4):719-25. PubMed ID: 17803212
[TBL] [Abstract][Full Text] [Related]
36. Improved transition path sampling methods for simulation of rare events.
Chopra M; Malshe R; Reddy AS; de Pablo JJ
J Chem Phys; 2008 Apr; 128(14):144104. PubMed ID: 18412420
[TBL] [Abstract][Full Text] [Related]
37. Free-energy-driven folding and thermodynamics of the 67-residue protein GS-alpha3W--a large-scale Monte Carlo study.
Meinke JH; Hansmann UH
J Comput Chem; 2009 Aug; 30(11):1642-8. PubMed ID: 19499540
[TBL] [Abstract][Full Text] [Related]
38. Side chain placement using estimation of distribution algorithms.
Santana R; LarraƱaga P; Lozano JA
Artif Intell Med; 2007 Jan; 39(1):49-63. PubMed ID: 16854574
[TBL] [Abstract][Full Text] [Related]
39. Collapsed cone convolution and analytical anisotropic algorithm dose calculations compared to VMC++ Monte Carlo simulations in clinical cases.
Hasenbalg F; Neuenschwander H; Mini R; Born EJ
Phys Med Biol; 2007 Jul; 52(13):3679-91. PubMed ID: 17664570
[TBL] [Abstract][Full Text] [Related]
40. Implementation of a symplectic multiple-time-step molecular dynamics algorithm, based on the united-residue mesoscopic potential energy function.
Rakowski F; Grochowski P; Lesyng B; Liwo A; Scheraga HA
J Chem Phys; 2006 Nov; 125(20):204107. PubMed ID: 17144690
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]