These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

136 related articles for article (PubMed ID: 16685717)

  • 61. Influence of ionization on the conformational preferences of peptide models. Ramachandran surfaces of N-formyl-glycine amide and N-formyl-alanine amide radical cations.
    Gil A; Sodupe M; Bertran J
    J Comput Chem; 2009 Sep; 30(12):1771-84. PubMed ID: 19090571
    [TBL] [Abstract][Full Text] [Related]  

  • 62. Vibrational spectroscopy of the G...C base pair: experiment, harmonic and anharmonic calculations, and the nature of the anharmonic couplings.
    Brauer B; Gerber RB; Kabelác M; Hobza P; Bakker JM; Abo Riziq AG; de Vries MS
    J Phys Chem A; 2005 Aug; 109(31):6974-84. PubMed ID: 16834057
    [TBL] [Abstract][Full Text] [Related]  

  • 63. Toward the atomistic simulation of T cell epitopes automated construction of MHC: peptide structures for free energy calculations.
    Todman SJ; Halling-Brown MD; Davies MN; Flower DR; Kayikci M; Moss DS
    J Mol Graph Model; 2008 Feb; 26(6):957-61. PubMed ID: 17766153
    [TBL] [Abstract][Full Text] [Related]  

  • 64. Estimating kinetic rates from accelerated molecular dynamics simulations: alanine dipeptide in explicit solvent as a case study.
    de Oliveira CA; Hamelberg D; McCammon JA
    J Chem Phys; 2007 Nov; 127(17):175105. PubMed ID: 17994855
    [TBL] [Abstract][Full Text] [Related]  

  • 65. A potential of mean force estimator based on nonequilibrium work exponential averages.
    Chelli R; Procacci P
    Phys Chem Chem Phys; 2009 Feb; 11(8):1152-8. PubMed ID: 19209357
    [TBL] [Abstract][Full Text] [Related]  

  • 66. Conformational preferences and cis-trans isomerization of L-lactic acid residue.
    Kang YK; Byun BJ
    J Phys Chem B; 2008 Jul; 112(30):9126-34. PubMed ID: 18605682
    [TBL] [Abstract][Full Text] [Related]  

  • 67. Can proteins and crystals self-catalyze methyl rotations?
    Baudry J; Smith JC
    J Phys Chem B; 2005 Nov; 109(43):20572-8. PubMed ID: 16853663
    [TBL] [Abstract][Full Text] [Related]  

  • 68. Atom-bond pairwise additive representation for cation-benzene potential energy surfaces: An ab initio validation study.
    AlbertĂ­ M; Aguilar A; Lucas JM; Pirani F; Cappelletti D; Coletti C; Re N
    J Phys Chem A; 2006 Jul; 110(28):9002-10. PubMed ID: 16836464
    [TBL] [Abstract][Full Text] [Related]  

  • 69. Adiabatic intramolecular movements for water systems.
    Pedroza LS; Silva AN
    J Chem Phys; 2008 Mar; 128(10):104311. PubMed ID: 18345892
    [TBL] [Abstract][Full Text] [Related]  

  • 70. Intra- and intermolecular interaction inducing pyramidalization on both sides of a proline dipeptide during isomerization: an ab initio QM/MM molecular dynamics simulation study in explicit water.
    Yonezawa Y; Nakata K; Sakakura K; Takada T; Nakamura H
    J Am Chem Soc; 2009 Apr; 131(12):4535-40. PubMed ID: 19267429
    [TBL] [Abstract][Full Text] [Related]  

  • 71. Free energy landscape of a biomolecule in dihedral principal component space: sampling convergence and correspondence between structures and minima.
    Maisuradze GG; Leitner DM
    Proteins; 2007 May; 67(3):569-78. PubMed ID: 17348026
    [TBL] [Abstract][Full Text] [Related]  

  • 72. From A to B in free energy space.
    Branduardi D; Gervasio FL; Parrinello M
    J Chem Phys; 2007 Feb; 126(5):054103. PubMed ID: 17302470
    [TBL] [Abstract][Full Text] [Related]  

  • 73. A coupled two-dimensional main chain torsional potential for protein dynamics: generation and implementation.
    Li Y; Gao Y; Zhang X; Wang X; Mou L; Duan L; He X; Mei Y; Zhang JZ
    J Mol Model; 2013 Sep; 19(9):3647-57. PubMed ID: 23765039
    [TBL] [Abstract][Full Text] [Related]  

  • 74. A knowledge-based structure-discriminating function that requires only main-chain atom coordinates.
    Makino Y; Itoh N
    BMC Struct Biol; 2008 Oct; 8():46. PubMed ID: 18957132
    [TBL] [Abstract][Full Text] [Related]  

  • 75. Electron-molecule scattering calculations in a 3D finite element R-matrix approach.
    Tonzani S; Greene CH
    J Chem Phys; 2005 Jan; 122(1):14111. PubMed ID: 15638646
    [TBL] [Abstract][Full Text] [Related]  

  • 76. Infrared spectra prediction and potential energy surface studies of methylarsine and methylstibine.
    Kim HW; Patel MK; Zeroka D
    Spectrochim Acta A Mol Biomol Spectrosc; 2009 Aug; 73(4):730-7. PubMed ID: 19419902
    [TBL] [Abstract][Full Text] [Related]  

  • 77. Molecular modeling of conformational properties of oligodepsipeptides.
    Zhang J; King M; Suggs L; Ren P
    Biomacromolecules; 2007 Oct; 8(10):3015-24. PubMed ID: 17877396
    [TBL] [Abstract][Full Text] [Related]  

  • 78. Using free energy perturbation to predict effects of changing force field parameters on computed conformational equilibriums of peptides.
    Cao Z; Liu H
    J Chem Phys; 2008 Jul; 129(1):015101. PubMed ID: 18624500
    [TBL] [Abstract][Full Text] [Related]  

  • 79. Periodic orbits in biological molecules: phase space structures and selectivity in alanine dipeptide.
    Farantos SC
    J Chem Phys; 2007 May; 126(17):175101. PubMed ID: 17492886
    [TBL] [Abstract][Full Text] [Related]  

  • 80. Refining the description of peptide backbone conformations improves protein simulations using the GROMOS 53A6 force field.
    Cao Z; Lin Z; Wang J; Liu H
    J Comput Chem; 2009 Mar; 30(4):645-60. PubMed ID: 18780355
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.