BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

226 related articles for article (PubMed ID: 16700056)

  • 1. Local feature analysis: a statistical theory for reproducible essential dynamics of large macromolecules.
    Zhang Z; Wriggers W
    Proteins; 2006 Aug; 64(2):391-403. PubMed ID: 16700056
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Can principal components yield a dimension reduced description of protein dynamics on long time scales?
    Lange OF; Grubmüller H
    J Phys Chem B; 2006 Nov; 110(45):22842-52. PubMed ID: 17092036
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Full correlation analysis of conformational protein dynamics.
    Lange OF; Grubmüller H
    Proteins; 2008 Mar; 70(4):1294-312. PubMed ID: 17876828
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Coarse-graining protein structures with local multivariate features from molecular dynamics.
    Zhang Z; Wriggers W
    J Phys Chem B; 2008 Nov; 112(44):14026-35. PubMed ID: 18855436
    [TBL] [Abstract][Full Text] [Related]  

  • 5. How many atoms are required to characterize accurately trajectory fluctuations of a protein?
    Cukier RI
    J Chem Phys; 2010 Jun; 132(24):245101. PubMed ID: 20590215
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Generalized correlation for biomolecular dynamics.
    Lange OF; Grubmüller H
    Proteins; 2006 Mar; 62(4):1053-61. PubMed ID: 16355416
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Multivariate frequency domain analysis of protein dynamics.
    Matsunaga Y; Fuchigami S; Kidera A
    J Chem Phys; 2009 Mar; 130(12):124104. PubMed ID: 19334805
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Collective Langevin dynamics of conformational motions in proteins.
    Lange OF; Grubmüller H
    J Chem Phys; 2006 Jun; 124(21):214903. PubMed ID: 16774438
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Apo adenylate kinase encodes its holo form: a principal component and varimax analysis.
    Cukier RI
    J Phys Chem B; 2009 Feb; 113(6):1662-72. PubMed ID: 19159290
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Application of time series analysis on molecular dynamics simulations of proteins: a study of different conformational spaces by principal component analysis.
    Alakent B; Doruker P; Camurdan MC
    J Chem Phys; 2004 Sep; 121(10):4759-69. PubMed ID: 15332910
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Detecting coupled collective motions in protein by independent subspace analysis.
    Sakuraba S; Joti Y; Kitao A
    J Chem Phys; 2010 Nov; 133(18):185102. PubMed ID: 21073231
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Molecular dynamics of large-ring cyclodextrins: principal component analysis of the conformational interconversions.
    Gotsev MG; Ivanov PM
    J Phys Chem B; 2009 Apr; 113(17):5752-9. PubMed ID: 19344106
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Elastic network models for understanding biomolecular machinery: from enzymes to supramolecular assemblies.
    Chennubhotla C; Rader AJ; Yang LW; Bahar I
    Phys Biol; 2005 Nov; 2(4):S173-80. PubMed ID: 16280623
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Dihedral angle principal component analysis of molecular dynamics simulations.
    Altis A; Nguyen PH; Hegger R; Stock G
    J Chem Phys; 2007 Jun; 126(24):244111. PubMed ID: 17614541
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Principal component and normal mode analysis of proteins; a quantitative comparison using the GroEL subunit.
    Skjaerven L; Martinez A; Reuter N
    Proteins; 2011 Jan; 79(1):232-43. PubMed ID: 21058295
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Collective motions in proteins: a covariance analysis of atomic fluctuations in molecular dynamics and normal mode simulations.
    Ichiye T; Karplus M
    Proteins; 1991; 11(3):205-17. PubMed ID: 1749773
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Essential spaces defined by NMR structure ensembles and molecular dynamics simulation show significant overlap.
    Abseher R; Horstink L; Hilbers CW; Nilges M
    Proteins; 1998 Jun; 31(4):370-82. PubMed ID: 9626697
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Molecular dynamics simulations of peptides and proteins with amplified collective motions.
    Zhang Z; Shi Y; Liu H
    Biophys J; 2003 Jun; 84(6):3583-93. PubMed ID: 12770868
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Essential dynamics of proteins.
    Amadei A; Linssen AB; Berendsen HJ
    Proteins; 1993 Dec; 17(4):412-25. PubMed ID: 8108382
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Exploring multiple timescale motions in protein GB3 using accelerated molecular dynamics and NMR spectroscopy.
    Markwick PR; Bouvignies G; Blackledge M
    J Am Chem Soc; 2007 Apr; 129(15):4724-30. PubMed ID: 17375925
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.