272 related articles for article (PubMed ID: 16757580)
1. An expectation-maximization algorithm for probabilistic reconstructions of full-length isoforms from splice graphs.
Xing Y; Yu T; Wu YN; Roy M; Kim J; Lee C
Nucleic Acids Res; 2006; 34(10):3150-60. PubMed ID: 16757580
[TBL] [Abstract][Full Text] [Related]
2. Reconstruction of full-length isoforms from splice graphs.
Xing Y; Lee C
Methods Mol Biol; 2008; 452():199-205. PubMed ID: 18566766
[TBL] [Abstract][Full Text] [Related]
3. The multiassembly problem: reconstructing multiple transcript isoforms from EST fragment mixtures.
Xing Y; Resch A; Lee C
Genome Res; 2004 Mar; 14(3):426-41. PubMed ID: 14962984
[TBL] [Abstract][Full Text] [Related]
4. EasyCluster2: an improved tool for clustering and assembling long transcriptome reads.
Bevilacqua V; Pietroleonardo N; Giannino E; Stroppa F; Simone D; Pesole G; Picardi E
BMC Bioinformatics; 2014; 15 Suppl 15(Suppl 15):S7. PubMed ID: 25474441
[TBL] [Abstract][Full Text] [Related]
5. CircAST: Full-length Assembly and Quantification of Alternatively Spliced Isoforms in Circular RNAs.
Wu J; Li Y; Wang C; Cui Y; Xu T; Wang C; Wang X; Sha J; Jiang B; Wang K; Hu Z; Guo X; Song X
Genomics Proteomics Bioinformatics; 2019 Oct; 17(5):522-534. PubMed ID: 32007626
[TBL] [Abstract][Full Text] [Related]
6. Detecting alternative gene structures from spliced ESTs: a computational approach.
Bonizzoni P; Mauri G; Pesole G; Picardi E; Pirola Y; Rizzi R
J Comput Biol; 2009 Jan; 16(1):43-66. PubMed ID: 19119993
[TBL] [Abstract][Full Text] [Related]
7. PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text.
Pirola Y; Rizzi R; Picardi E; Pesole G; Della Vedova G; Bonizzoni P
BMC Bioinformatics; 2012 Apr; 13 Suppl 5(Suppl 5):S2. PubMed ID: 22537006
[TBL] [Abstract][Full Text] [Related]
8. The third and fourth tropomyosin isoforms of Caenorhabditis elegans are expressed in the pharynx and intestines and are essential for development and morphology.
Anyanful A; Sakube Y; Takuwa K; Kagawa H
J Mol Biol; 2001 Oct; 313(3):525-37. PubMed ID: 11676537
[TBL] [Abstract][Full Text] [Related]
9. Investigation of tissue-specific human orthologous alternative splice events in pig.
Nygard AB; Jørgensen CB; Cirera S; Fredholm M
Anim Biotechnol; 2010 Oct; 21(4):203-16. PubMed ID: 20967640
[TBL] [Abstract][Full Text] [Related]
10. A probabilistic framework for aligning paired-end RNA-seq data.
Hu Y; Wang K; He X; Chiang DY; Prins JF; Liu J
Bioinformatics; 2010 Aug; 26(16):1950-7. PubMed ID: 20576625
[TBL] [Abstract][Full Text] [Related]
11. Long read transcript profiling of ion channel splice isoforms.
Hall NAL; Husain SM; Lee H; Tunbridge EM
Methods Enzymol; 2021; 654():345-364. PubMed ID: 34120721
[TBL] [Abstract][Full Text] [Related]
12. ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization.
Castrignanò T; Rizzi R; Talamo IG; De Meo PD; Anselmo A; Bonizzoni P; Pesole G
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W440-3. PubMed ID: 16845044
[TBL] [Abstract][Full Text] [Related]
13. Strengths and weaknesses of EST-based prediction of tissue-specific alternative splicing.
Gupta S; Zink D; Korn B; Vingron M; Haas SA
BMC Genomics; 2004 Sep; 5():72. PubMed ID: 15453915
[TBL] [Abstract][Full Text] [Related]
14. EASED: Extended Alternatively Spliced EST Database.
Pospisil H; Herrmann A; Bortfeldt RH; Reich JG
Nucleic Acids Res; 2004 Jan; 32(Database issue):D70-4. PubMed ID: 14681361
[TBL] [Abstract][Full Text] [Related]
15. Alternative splicing of the Caenorhabditis elegans lev-11 tropomyosin gene is regulated in a tissue-specific manner.
Watabe E; Ono S; Kuroyanagi H
Cytoskeleton (Hoboken); 2018 Oct; 75(10):427-436. PubMed ID: 30155988
[TBL] [Abstract][Full Text] [Related]
16. ECgene: genome-based EST clustering and gene modeling for alternative splicing.
Kim N; Shin S; Lee S
Genome Res; 2005 Apr; 15(4):566-76. PubMed ID: 15805497
[TBL] [Abstract][Full Text] [Related]
17. SPACE: an algorithm to predict and quantify alternatively spliced isoforms using microarrays.
Anton MA; Gorostiaga D; Guruceaga E; Segura V; Carmona-Saez P; Pascual-Montano A; Pio R; Montuenga LM; Rubio A
Genome Biol; 2008; 9(2):R46. PubMed ID: 18312629
[TBL] [Abstract][Full Text] [Related]
18. Splicing graphs and EST assembly problem.
Heber S; Alekseyev M; Sze SH; Tang H; Pevzner PA
Bioinformatics; 2002; 18 Suppl 1():S181-8. PubMed ID: 12169546
[TBL] [Abstract][Full Text] [Related]
19. Functional Networks of Highest-Connected Splice Isoforms: From The Chromosome 17 Human Proteome Project.
Li HD; Menon R; Govindarajoo B; Panwar B; Zhang Y; Omenn GS; Guan Y
J Proteome Res; 2015 Sep; 14(9):3484-91. PubMed ID: 26216192
[TBL] [Abstract][Full Text] [Related]
20. A linear-time algorithm for finding a maximum-length ORF in a splice graph.
Jaromczyk JW; Moore N; Schardl CL
Int J Comput Biol Drug Des; 2012; 5(3-4):284-97. PubMed ID: 23013654
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]