These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
115 related articles for article (PubMed ID: 16761921)
21. CTX-BLAST: context sensitive version of protein BLAST. Gambin A; Wojtalewicz P Bioinformatics; 2007 Jul; 23(13):1686-8. PubMed ID: 17459964 [TBL] [Abstract][Full Text] [Related]
22. High speed BLASTN: an accelerated MegaBLAST search tool. Chen Y; Ye W; Zhang Y; Xu Y Nucleic Acids Res; 2015 Sep; 43(16):7762-8. PubMed ID: 26250111 [TBL] [Abstract][Full Text] [Related]
23. Massively Parallel Implementation of Sequence Alignment with Basic Local Alignment Search Tool Using Parallel Computing in Java Library. Nowicki M; Bzhalava D; BaŁa P J Comput Biol; 2018 Aug; 25(8):871-881. PubMed ID: 30004240 [TBL] [Abstract][Full Text] [Related]
24. A large-scale evaluation of algorithms to calculate average nucleotide identity. Yoon SH; Ha SM; Lim J; Kwon S; Chun J Antonie Van Leeuwenhoek; 2017 Oct; 110(10):1281-1286. PubMed ID: 28204908 [TBL] [Abstract][Full Text] [Related]
25. BLAST and FASTA similarity searching for multiple sequence alignment. Pearson WR Methods Mol Biol; 2014; 1079():75-101. PubMed ID: 24170396 [TBL] [Abstract][Full Text] [Related]
26. FastBLAST: homology relationships for millions of proteins. Price MN; Dehal PS; Arkin AP PLoS One; 2008; 3(10):e3589. PubMed ID: 18974889 [TBL] [Abstract][Full Text] [Related]
27. Within the twilight zone: a sensitive profile-profile comparison tool based on information theory. Yona G; Levitt M J Mol Biol; 2002 Feb; 315(5):1257-75. PubMed ID: 11827492 [TBL] [Abstract][Full Text] [Related]
28. BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences. Tatusova TA; Madden TL FEMS Microbiol Lett; 1999 May; 174(2):247-50. PubMed ID: 10339815 [TBL] [Abstract][Full Text] [Related]
29. An efficient algorithm after ungapped analysis in BLAST. Garg D; Saxena SC; Bhardwaj LM DNA Seq; 2006 Aug; 17(4):247-53. PubMed ID: 17312943 [TBL] [Abstract][Full Text] [Related]
31. NOBLAST and JAMBLAST: New Options for BLAST and a Java Application Manager for BLAST results. Lagnel J; Tsigenopoulos CS; Iliopoulos I Bioinformatics; 2009 Mar; 25(6):824-6. PubMed ID: 19181685 [TBL] [Abstract][Full Text] [Related]
32. COMPASS server for remote homology inference. Sadreyev RI; Tang M; Kim BH; Grishin NV Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W653-8. PubMed ID: 17517780 [TBL] [Abstract][Full Text] [Related]
33. Installing, maintaining, and using a local copy of BLAST for intranet and workstation use. Littlejohn TG Curr Protoc Bioinformatics; 2004 May; Chapter 3():Unit 3.11. PubMed ID: 18428721 [TBL] [Abstract][Full Text] [Related]
34. Improving Retrieval Efficacy of Homology Searches Using the False Discovery Rate. Carroll HD; Williams AC; Davis AG; Spouge JL IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(3):531-7. PubMed ID: 26357264 [TBL] [Abstract][Full Text] [Related]
35. Performance modelling of parallel BLAST using Intel and PGI compilers on an infiniband-based HPC cluster. Al-Mulhem M; Al-Shaikh R Int J Bioinform Res Appl; 2013; 9(5):534-46. PubMed ID: 24001726 [TBL] [Abstract][Full Text] [Related]