187 related articles for article (PubMed ID: 16790056)
1. Subfamily logos: visualization of sequence deviations at alignment positions with high information content.
Beitz E
BMC Bioinformatics; 2006 Jun; 7():313. PubMed ID: 16790056
[TBL] [Abstract][Full Text] [Related]
2. BiasViz: visualization of amino acid biased regions in protein alignments.
Huska MR; Buschmann H; Andrade-Navarro MA
Bioinformatics; 2007 Nov; 23(22):3093-4. PubMed ID: 17921493
[TBL] [Abstract][Full Text] [Related]
3. On distance and similarity in fold space.
Sippl MJ
Bioinformatics; 2008 Mar; 24(6):872-3. PubMed ID: 18227113
[TBL] [Abstract][Full Text] [Related]
4. Blast sampling for structural and functional analyses.
Friedrich A; Ripp R; Garnier N; Bettler E; Deléage G; Poch O; Moulinier L
BMC Bioinformatics; 2007 Feb; 8():62. PubMed ID: 17319945
[TBL] [Abstract][Full Text] [Related]
5. FORTE: a profile-profile comparison tool for protein fold recognition.
Tomii K; Akiyama Y
Bioinformatics; 2004 Mar; 20(4):594-5. PubMed ID: 14764565
[TBL] [Abstract][Full Text] [Related]
6. CoC: a database of universally conserved residues in protein folds.
Donald JE; Hubner IA; Rotemberg VM; Shakhnovich EI; Mirny LA
Bioinformatics; 2005 May; 21(10):2539-40. PubMed ID: 15746286
[TBL] [Abstract][Full Text] [Related]
7. ARCS: an aggregated related column scoring scheme for aligned sequences.
Song B; Choi JH; Chen G; Szymanski J; Zhang GQ; Tung AK; Kang J; Kim S; Yang J
Bioinformatics; 2006 Oct; 22(19):2326-32. PubMed ID: 16870930
[TBL] [Abstract][Full Text] [Related]
8. Parmodel: a web server for automated comparative modeling of proteins.
Uchôa HB; Jorge GE; Freitas Da Silveira NJ; Camera JC; Canduri F; De Azevedo WF
Biochem Biophys Res Commun; 2004 Dec; 325(4):1481-6. PubMed ID: 15555595
[TBL] [Abstract][Full Text] [Related]
9. Adding some SPICE to DAS.
Prlić A; Down TA; Hubbard TJ
Bioinformatics; 2005 Sep; 21 Suppl 2(Suppl 2):ii40-1. PubMed ID: 16204122
[TBL] [Abstract][Full Text] [Related]
10. Phylo-mLogo: an interactive and hierarchical multiple-logo visualization tool for alignment of many sequences.
Shih AC; Lee DT; Peng CL; Wu YW
BMC Bioinformatics; 2007 Feb; 8():63. PubMed ID: 17319966
[TBL] [Abstract][Full Text] [Related]
11. MINER: software for phylogenetic motif identification.
La D; Livesay DR
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W267-70. PubMed ID: 15980467
[TBL] [Abstract][Full Text] [Related]
12. PIVOT: protein interacions visualizatiOn tool.
Orlev N; Shamir R; Shiloh Y
Bioinformatics; 2004 Feb; 20(3):424-5. PubMed ID: 14960471
[TBL] [Abstract][Full Text] [Related]
13. Bayesian search of functionally divergent protein subgroups and their function specific residues.
Marttinen P; Corander J; Törönen P; Holm L
Bioinformatics; 2006 Oct; 22(20):2466-74. PubMed ID: 16870932
[TBL] [Abstract][Full Text] [Related]
14. Multiple Alignment of protein structures and sequences for VMD.
Eargle J; Wright D; Luthey-Schulten Z
Bioinformatics; 2006 Feb; 22(4):504-6. PubMed ID: 16339280
[TBL] [Abstract][Full Text] [Related]
15. BRAGI: linking and visualization of database information in a 3D viewer and modeling tool.
Reichelt J; Dieterich G; Kvesic M; Schomburg D; Heinz DW
Bioinformatics; 2005 Apr; 21(7):1291-3. PubMed ID: 15546941
[TBL] [Abstract][Full Text] [Related]
16. Efficient functional clustering of protein sequences using the Dirichlet process.
Brown DP
Bioinformatics; 2008 Aug; 24(16):1765-71. PubMed ID: 18511467
[TBL] [Abstract][Full Text] [Related]
17. The global trace graph, a novel paradigm for searching protein sequence databases.
Heger A; Mallick S; Wilton C; Holm L
Bioinformatics; 2007 Sep; 23(18):2361-7. PubMed ID: 17823134
[TBL] [Abstract][Full Text] [Related]
18. Visualizing profile-profile alignment: pairwise HMM logos.
Schuster-Böckler B; Bateman A
Bioinformatics; 2005 Jun; 21(12):2912-3. PubMed ID: 15827079
[TBL] [Abstract][Full Text] [Related]
19. SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins.
Kalinina OV; Novichkov PS; Mironov AA; Gelfand MS; Rakhmaninova AB
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W424-8. PubMed ID: 15215423
[TBL] [Abstract][Full Text] [Related]
20. FCP: functional coverage of the proteome by structures.
García-Serna R; Opatowski L; Mestres J
Bioinformatics; 2006 Jul; 22(14):1792-3. PubMed ID: 16705012
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
