402 related articles for article (PubMed ID: 16790932)
1. Effect of crystal freezing and small-molecule binding on internal cavity size in a large protein: X-ray and docking studies of lipoxygenase at ambient and low temperature at 2.0 A resolution.
Skrzypczak-Jankun E; Borbulevych OY; Zavodszky MI; Baranski MR; Padmanabhan K; Petricek V; Jankun J
Acta Crystallogr D Biol Crystallogr; 2006 Jul; 62(Pt 7):766-75. PubMed ID: 16790932
[TBL] [Abstract][Full Text] [Related]
2. Testing a flexible-receptor docking algorithm in a model binding site.
Wei BQ; Weaver LH; Ferrari AM; Matthews BW; Shoichet BK
J Mol Biol; 2004 Apr; 337(5):1161-82. PubMed ID: 15046985
[TBL] [Abstract][Full Text] [Related]
3. FlexE: efficient molecular docking considering protein structure variations.
Claussen H; Buning C; Rarey M; Lengauer T
J Mol Biol; 2001 Apr; 308(2):377-95. PubMed ID: 11327774
[TBL] [Abstract][Full Text] [Related]
4. FDS: flexible ligand and receptor docking with a continuum solvent model and soft-core energy function.
Taylor RD; Jewsbury PJ; Essex JW
J Comput Chem; 2003 Oct; 24(13):1637-56. PubMed ID: 12926007
[TBL] [Abstract][Full Text] [Related]
5. Structural stability of soybean lipoxygenase-1 in solution as probed by small angle X-ray scattering.
Dainese E; Sabatucci A; van Zadelhoff G; Angelucci CB; Vachette P; Veldink GA; Agrò AF; Maccarrone M
J Mol Biol; 2005 May; 349(1):143-52. PubMed ID: 15876374
[TBL] [Abstract][Full Text] [Related]
6. Crystal structure of soybean lipoxygenase L-1 at 1.4 A resolution.
Minor W; Steczko J; Stec B; Otwinowski Z; Bolin JT; Walter R; Axelrod B
Biochemistry; 1996 Aug; 35(33):10687-701. PubMed ID: 8718858
[TBL] [Abstract][Full Text] [Related]
7. Computational sampling of a cryptic drug binding site in a protein receptor: explicit solvent molecular dynamics and inhibitor docking to p38 MAP kinase.
Frembgen-Kesner T; Elcock AH
J Mol Biol; 2006 May; 359(1):202-14. PubMed ID: 16616932
[TBL] [Abstract][Full Text] [Related]
8. Structural properties of plant and mammalian lipoxygenases. Temperature-dependent conformational alterations and membrane binding ability.
Mei G; Di Venere A; Nicolai E; Angelucci CB; Ivanov I; Sabatucci A; Dainese E; Kuhn H; Maccarrone M
Biochemistry; 2008 Sep; 47(35):9234-42. PubMed ID: 18693758
[TBL] [Abstract][Full Text] [Related]
9. Large-scale networks of hydration water molecules around bovine beta-trypsin revealed by cryogenic X-ray crystal structure analysis.
Nakasako M
J Mol Biol; 1999 Jun; 289(3):547-64. PubMed ID: 10356328
[TBL] [Abstract][Full Text] [Related]
10. Human interleukin-4 and variant R88Q: phasing X-ray diffraction data by molecular replacement using X-ray and nuclear magnetic resonance models.
Müller T; Oehlenschläger F; Buehner M
J Mol Biol; 1995 Mar; 247(2):360-72. PubMed ID: 7707380
[TBL] [Abstract][Full Text] [Related]
11. Conformational selection of protein kinase A revealed by flexible-ligand flexible-protein docking.
Huang Z; Wong CF
J Comput Chem; 2009 Mar; 30(4):631-44. PubMed ID: 18711718
[TBL] [Abstract][Full Text] [Related]
12. Structure of soybean lipoxygenase L3 and a comparison with its L1 isoenzyme.
Skrzypczak-Jankun E; Amzel LM; Kroa BA; Funk MO
Proteins; 1997 Sep; 29(1):15-31. PubMed ID: 9294864
[TBL] [Abstract][Full Text] [Related]
13. Fully automated flexible docking of ligands into flexible synthetic receptors using forward and inverse docking strategies.
Kämper A; Apostolakis J; Rarey M; Marian CM; Lengauer T
J Chem Inf Model; 2006; 46(2):903-11. PubMed ID: 16563022
[TBL] [Abstract][Full Text] [Related]
14. Evaluation of docking performance: comparative data on docking algorithms.
Kontoyianni M; McClellan LM; Sokol GS
J Med Chem; 2004 Jan; 47(3):558-65. PubMed ID: 14736237
[TBL] [Abstract][Full Text] [Related]
15. Effect of input differences on the results of docking calculations.
Feher M; Williams CI
J Chem Inf Model; 2009 Jul; 49(7):1704-14. PubMed ID: 19530660
[TBL] [Abstract][Full Text] [Related]
16. Pros and cons of cryocrystallography: should we also collect a room-temperature data set?
Dunlop KV; Irvin RT; Hazes B
Acta Crystallogr D Biol Crystallogr; 2005 Jan; 61(Pt 1):80-7. PubMed ID: 15608379
[TBL] [Abstract][Full Text] [Related]
17. Structural determination of a partially hemihedrally twinned actin crystal.
Govindasamy L; Reutzel R; Agbandje-McKenna M; McKenna R
Acta Crystallogr D Biol Crystallogr; 2004 Jun; 60(Pt 6):1040-7. PubMed ID: 15159563
[TBL] [Abstract][Full Text] [Related]
18. Reversible lattice repacking illustrates the temperature dependence of macromolecular interactions.
Juers DH; Matthews BW
J Mol Biol; 2001 Aug; 311(4):851-62. PubMed ID: 11518535
[TBL] [Abstract][Full Text] [Related]
19. Automatic and efficient decomposition of two-dimensional structures of small molecules for fragment-based high-throughput docking.
Kolb P; Caflisch A
J Med Chem; 2006 Dec; 49(25):7384-92. PubMed ID: 17149868
[TBL] [Abstract][Full Text] [Related]
20. EADock: docking of small molecules into protein active sites with a multiobjective evolutionary optimization.
Grosdidier A; Zoete V; Michielin O
Proteins; 2007 Jun; 67(4):1010-25. PubMed ID: 17380512
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]