BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

175 related articles for article (PubMed ID: 16791737)

  • 1. iDC: A comprehensive toolkit for the analysis of residual dipolar couplings for macromolecular structure determination.
    Wei Y; Werner MH
    J Biomol NMR; 2006 May; 35(1):17-25. PubMed ID: 16791737
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Advances in the REDCAT software package.
    Schmidt C; Irausquin SJ; Valafar H
    BMC Bioinformatics; 2013 Oct; 14():302. PubMed ID: 24098943
    [TBL] [Abstract][Full Text] [Related]  

  • 3. REDCAT: a residual dipolar coupling analysis tool.
    Valafar H; Prestegard JH
    J Magn Reson; 2004 Apr; 167(2):228-41. PubMed ID: 15040978
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Application of correlated residual dipolar couplings to the determination of the molecular alignment tensor magnitude of oriented proteins and nucleic acids.
    Bryce DL; Bax A
    J Biomol NMR; 2004 Mar; 28(3):273-87. PubMed ID: 14752260
    [TBL] [Abstract][Full Text] [Related]  

  • 5. REDCRAFT: A computational platform using residual dipolar coupling NMR data for determining structures of perdeuterated proteins in solution.
    Cole CA; Daigham NS; Liu G; Montelione GT; Valafar H
    PLoS Comput Biol; 2021 Feb; 17(2):e1008060. PubMed ID: 33524015
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Top-down approach in protein RDC data analysis: de novo estimation of the alignment tensor.
    Chen K; Tjandra N
    J Biomol NMR; 2007 Aug; 38(4):303-13. PubMed ID: 17593526
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A novel interactive tool for rigid-body modeling of multi-domain macromolecules using residual dipolar couplings.
    Dosset P; Hus JC; Marion D; Blackledge M
    J Biomol NMR; 2001 Jul; 20(3):223-31. PubMed ID: 11519746
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A tensor-free method for the structural and dynamical refinement of proteins using residual dipolar couplings.
    Camilloni C; Vendruscolo M
    J Phys Chem B; 2015 Jan; 119(3):653-61. PubMed ID: 24824082
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Increased usability, algorithmic improvements and incorporation of data mining for structure calculation of proteins with REDCRAFT software package.
    Cole C; Parks C; Rachele J; Valafar H
    BMC Bioinformatics; 2020 Dec; 21(Suppl 9):204. PubMed ID: 33272215
    [TBL] [Abstract][Full Text] [Related]  

  • 10. MSpin-RDC. A program for the use of residual dipolar couplings for structure elucidation of small molecules.
    Navarro-Vázquez A
    Magn Reson Chem; 2012 Dec; 50 Suppl 1():S73-9. PubMed ID: 23280663
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Explicit treatment of force contribution from alignment tensor using overdetermined linear equations and its application in NMR structure determination.
    Rathinavelan T; Im W
    J Comput Chem; 2007 Aug; 28(11):1858-64. PubMed ID: 17405113
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Structure Calculation and Reconstruction of Discrete-State Dynamics from Residual Dipolar Couplings.
    Cole CA; Mukhopadhyay R; Omar H; Hennig M; Valafar H
    J Chem Theory Comput; 2016 Apr; 12(4):1408-22. PubMed ID: 26984680
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Anisotropic small amplitude Peptide plane dynamics in proteins from residual dipolar couplings.
    Bernadó P; Blackledge M
    J Am Chem Soc; 2004 Apr; 126(15):4907-20. PubMed ID: 15080696
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Backbone resonance assignment and order tensor estimation using residual dipolar couplings.
    Shealy P; Liu Y; Simin M; Valafar H
    J Biomol NMR; 2011 Aug; 50(4):357-69. PubMed ID: 21667298
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Refinement of local and long-range structural order in theophylline-binding RNA using (13)C-(1)H residual dipolar couplings and restrained molecular dynamics.
    Sibille N; Pardi A; Simorre JP; Blackledge M
    J Am Chem Soc; 2001 Dec; 123(49):12135-46. PubMed ID: 11734011
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Solution structure of tRNAVal from refinement of homology model against residual dipolar coupling and SAXS data.
    Grishaev A; Ying J; Canny MD; Pardi A; Bax A
    J Biomol NMR; 2008 Oct; 42(2):99-109. PubMed ID: 18787959
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The use of residual dipolar coupling in studying proteins by NMR.
    Chen K; Tjandra N
    Top Curr Chem; 2012; 326():47-67. PubMed ID: 21952837
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Efficient and accurate estimation of relative order tensors from lambda-maps.
    Mukhopadhyay R; Miao X; Shealy P; Valafar H
    J Magn Reson; 2009 Jun; 198(2):236-47. PubMed ID: 19345125
    [TBL] [Abstract][Full Text] [Related]  

  • 19. De novo determination of protein backbone structure from residual dipolar couplings using Rosetta.
    Rohl CA; Baker D
    J Am Chem Soc; 2002 Mar; 124(11):2723-9. PubMed ID: 11890823
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Improvement and analysis of computational methods for prediction of residual dipolar couplings.
    Berlin K; O'Leary DP; Fushman D
    J Magn Reson; 2009 Nov; 201(1):25-33. PubMed ID: 19700353
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.