151 related articles for article (PubMed ID: 16792803)
1. PHOG: a database of supergenomes built from proteome complements.
Merkeev IV; Novichkov PS; Mironov AA
BMC Evol Biol; 2006 Jun; 6():52. PubMed ID: 16792803
[TBL] [Abstract][Full Text] [Related]
2. PHOG-BLAST--a new generation tool for fast similarity search of protein families.
Merkeev IV; Mironov AA
BMC Evol Biol; 2006 Jun; 6():51. PubMed ID: 16792802
[TBL] [Abstract][Full Text] [Related]
3. FUNYBASE: a FUNgal phYlogenomic dataBASE.
Marthey S; Aguileta G; Rodolphe F; Gendrault A; Giraud T; Fournier E; Lopez-Villavicencio M; Gautier A; Lebrun MH; Chiapello H
BMC Bioinformatics; 2008 Oct; 9():456. PubMed ID: 18954438
[TBL] [Abstract][Full Text] [Related]
4. Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea.
Makarova KS; Sorokin AV; Novichkov PS; Wolf YI; Koonin EV
Biol Direct; 2007 Nov; 2():33. PubMed ID: 18042280
[TBL] [Abstract][Full Text] [Related]
5. [A evolutionary approach to identification of orthologous relationship across proteomes].
Shi SY; Ding DF
Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai); 2002 Jan; 34(1):88-94. PubMed ID: 11958142
[TBL] [Abstract][Full Text] [Related]
6. SuperPartitions: detection and classification of orthologs.
Tekaia F; Yeramian E
Gene; 2012 Jan; 492(1):199-211. PubMed ID: 22056699
[TBL] [Abstract][Full Text] [Related]
7. PhyloPat: phylogenetic pattern analysis of eukaryotic genes.
Hulsen T; de Vlieg J; Groenen PM
BMC Bioinformatics; 2006 Sep; 7():398. PubMed ID: 16948844
[TBL] [Abstract][Full Text] [Related]
8. MBGD: a platform for microbial comparative genomics based on the automated construction of orthologous groups.
Uchiyama I
Nucleic Acids Res; 2007 Jan; 35(Database issue):D343-6. PubMed ID: 17135196
[TBL] [Abstract][Full Text] [Related]
9. Comprehensive analysis of orthologous protein domains using the HOPS database.
Storm CE; Sonnhammer EL
Genome Res; 2003 Oct; 13(10):2353-62. PubMed ID: 14525933
[TBL] [Abstract][Full Text] [Related]
10. Automatic clustering of orthologs and in-paralogs from pairwise species comparisons.
Remm M; Storm CE; Sonnhammer EL
J Mol Biol; 2001 Dec; 314(5):1041-52. PubMed ID: 11743721
[TBL] [Abstract][Full Text] [Related]
11. u-Genome: a database on genome design in unicellular genomes.
Sakharkar KR; Chaturvedi I; Chow VT; Kwoh CK; Kangueane P; Sakharkar MK
In Silico Biol; 2005; 5(5-6):611-5. PubMed ID: 16610139
[TBL] [Abstract][Full Text] [Related]
12. Phytome: a platform for plant comparative genomics.
Hartmann S; Lu D; Phillips J; Vision TJ
Nucleic Acids Res; 2006 Jan; 34(Database issue):D724-30. PubMed ID: 16381967
[TBL] [Abstract][Full Text] [Related]
13. The origins of modern proteomes.
Kurland CG; Canbäck B; Berg OG
Biochimie; 2007 Dec; 89(12):1454-63. PubMed ID: 17949885
[TBL] [Abstract][Full Text] [Related]
14. A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm.
Podell S; Gaasterland T; Allen EE
BMC Bioinformatics; 2008 Oct; 9():419. PubMed ID: 18840280
[TBL] [Abstract][Full Text] [Related]
15. Cross-referencing eukaryotic genomes: TIGR Orthologous Gene Alignments (TOGA).
Lee Y; Sultana R; Pertea G; Cho J; Karamycheva S; Tsai J; Parvizi B; Cheung F; Antonescu V; White J; Holt I; Liang F; Quackenbush J
Genome Res; 2002 Mar; 12(3):493-502. PubMed ID: 11875039
[TBL] [Abstract][Full Text] [Related]
16. Clusters of proteins in archaeal and bacterial proteomes using compositional analysis.
Nandi T; Brahmachari SK; Kannan K; Ramachandran S
In Silico Biol; 2004; 4(4):573-91. PubMed ID: 15752074
[TBL] [Abstract][Full Text] [Related]
17. Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell.
Makarova KS; Aravind L; Galperin MY; Grishin NV; Tatusov RL; Wolf YI; Koonin EV
Genome Res; 1999 Jul; 9(7):608-28. PubMed ID: 10413400
[TBL] [Abstract][Full Text] [Related]
18. BLASTO: a tool for searching orthologous groups.
Zhou Y; Landweber LF
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W678-82. PubMed ID: 17483516
[TBL] [Abstract][Full Text] [Related]
19. The quest for orthologs: finding the corresponding gene across genomes.
Kuzniar A; van Ham RC; Pongor S; Leunissen JA
Trends Genet; 2008 Nov; 24(11):539-51. PubMed ID: 18819722
[TBL] [Abstract][Full Text] [Related]
20. eggNOG: automated construction and annotation of orthologous groups of genes.
Jensen LJ; Julien P; Kuhn M; von Mering C; Muller J; Doerks T; Bork P
Nucleic Acids Res; 2008 Jan; 36(Database issue):D250-4. PubMed ID: 17942413
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
