148 related articles for article (PubMed ID: 16792803)
41. Benchmarking orthology methods using phylogenetic patterns defined at the base of Eukaryotes.
Deutekom ES; Snel B; van Dam TJP
Brief Bioinform; 2021 May; 22(3):. PubMed ID: 32935832
[TBL] [Abstract][Full Text] [Related]
42. MBGD: microbial genome database for comparative analysis.
Uchiyama I
Nucleic Acids Res; 2003 Jan; 31(1):58-62. PubMed ID: 12519947
[TBL] [Abstract][Full Text] [Related]
43. The COG database: an updated version includes eukaryotes.
Tatusov RL; Fedorova ND; Jackson JD; Jacobs AR; Kiryutin B; Koonin EV; Krylov DM; Mazumder R; Mekhedov SL; Nikolskaya AN; Rao BS; Smirnov S; Sverdlov AV; Vasudevan S; Wolf YI; Yin JJ; Natale DA
BMC Bioinformatics; 2003 Sep; 4():41. PubMed ID: 12969510
[TBL] [Abstract][Full Text] [Related]
44. GreenPhylDB v2.0: comparative and functional genomics in plants.
Rouard M; Guignon V; Aluome C; Laporte MA; Droc G; Walde C; Zmasek CM; Périn C; Conte MG
Nucleic Acids Res; 2011 Jan; 39(Database issue):D1095-102. PubMed ID: 20864446
[TBL] [Abstract][Full Text] [Related]
45. RIO: analyzing proteomes by automated phylogenomics using resampled inference of orthologs.
Zmasek CM; Eddy SR
BMC Bioinformatics; 2002 May; 3():14. PubMed ID: 12028595
[TBL] [Abstract][Full Text] [Related]
46. OrthoVenn3: an integrated platform for exploring and visualizing orthologous data across genomes.
Sun J; Lu F; Luo Y; Bie L; Xu L; Wang Y
Nucleic Acids Res; 2023 Jul; 51(W1):W397-W403. PubMed ID: 37114999
[TBL] [Abstract][Full Text] [Related]
47. OrthoDB: the hierarchical catalog of eukaryotic orthologs.
Kriventseva EV; Rahman N; Espinosa O; Zdobnov EM
Nucleic Acids Res; 2008 Jan; 36(Database issue):D271-5. PubMed ID: 17947323
[TBL] [Abstract][Full Text] [Related]
48. OMA orthology in 2024: improved prokaryote coverage, ancestral and extant GO enrichment, a revamped synteny viewer and more in the OMA Ecosystem.
Altenhoff AM; Warwick Vesztrocy A; Bernard C; Train CM; Nicheperovich A; Prieto Baños S; Julca I; Moi D; Nevers Y; Majidian S; Dessimoz C; Glover NM
Nucleic Acids Res; 2024 Jan; 52(D1):D513-D521. PubMed ID: 37962356
[TBL] [Abstract][Full Text] [Related]
49. Investigating 42 candidate orthologous protein groups by molecular evolutionary analysis on genome scale.
Xie T; Ding D
Gene; 2000 Dec; 261(2):305-10. PubMed ID: 11167018
[TBL] [Abstract][Full Text] [Related]
50. eggNOG v4.0: nested orthology inference across 3686 organisms.
Powell S; Forslund K; Szklarczyk D; Trachana K; Roth A; Huerta-Cepas J; Gabaldón T; Rattei T; Creevey C; Kuhn M; Jensen LJ; von Mering C; Bork P
Nucleic Acids Res; 2014 Jan; 42(Database issue):D231-9. PubMed ID: 24297252
[TBL] [Abstract][Full Text] [Related]
51. Microbial genome analysis: the COG approach.
Galperin MY; Kristensen DM; Makarova KS; Wolf YI; Koonin EV
Brief Bioinform; 2019 Jul; 20(4):1063-1070. PubMed ID: 28968633
[TBL] [Abstract][Full Text] [Related]
52. Ortholog clustering on a multipartite graph.
Vashist A; Kulikowski CA; Muchnik I
IEEE/ACM Trans Comput Biol Bioinform; 2007; 4(1):17-27. PubMed ID: 17277410
[TBL] [Abstract][Full Text] [Related]
53. QuartetS-DB: a large-scale orthology database for prokaryotes and eukaryotes inferred by evolutionary evidence.
Yu C; Desai V; Cheng L; Reifman J
BMC Bioinformatics; 2012 Jun; 13():143. PubMed ID: 22726705
[TBL] [Abstract][Full Text] [Related]
54. OrthoMaM v10: Scaling-Up Orthologous Coding Sequence and Exon Alignments with More than One Hundred Mammalian Genomes.
Scornavacca C; Belkhir K; Lopez J; Dernat R; Delsuc F; Douzery EJP; Ranwez V
Mol Biol Evol; 2019 Apr; 36(4):861-862. PubMed ID: 30698751
[TBL] [Abstract][Full Text] [Related]
55. Identifying single copy orthologs in Metazoa.
Creevey CJ; Muller J; Doerks T; Thompson JD; Arendt D; Bork P
PLoS Comput Biol; 2011 Dec; 7(12):e1002269. PubMed ID: 22144877
[TBL] [Abstract][Full Text] [Related]
56. An SVD-based comparison of nine whole eukaryotic genomes supports a coelomate rather than ecdysozoan lineage.
Stuart GW; Berry MW
BMC Bioinformatics; 2004 Dec; 5():204. PubMed ID: 15606920
[TBL] [Abstract][Full Text] [Related]
57. eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges.
Powell S; Szklarczyk D; Trachana K; Roth A; Kuhn M; Muller J; Arnold R; Rattei T; Letunic I; Doerks T; Jensen LJ; von Mering C; Bork P
Nucleic Acids Res; 2012 Jan; 40(Database issue):D284-9. PubMed ID: 22096231
[TBL] [Abstract][Full Text] [Related]
58. Inferring hierarchical orthologous groups from orthologous gene pairs.
Altenhoff AM; Gil M; Gonnet GH; Dessimoz C
PLoS One; 2013; 8(1):e53786. PubMed ID: 23342000
[TBL] [Abstract][Full Text] [Related]
59. eggNOG 6.0: enabling comparative genomics across 12 535 organisms.
Hernández-Plaza A; Szklarczyk D; Botas J; Cantalapiedra CP; Giner-Lamia J; Mende DR; Kirsch R; Rattei T; Letunic I; Jensen LJ; Bork P; von Mering C; Huerta-Cepas J
Nucleic Acids Res; 2023 Jan; 51(D1):D389-D394. PubMed ID: 36399505
[TBL] [Abstract][Full Text] [Related]
60. Proteome-wide analysis of protein function composition reveals the clustering and phylogenetic properties of organisms.
Ling L; Wang J; Cui Y; Li W; Chen R
Mol Phylogenet Evol; 2002 Oct; 25(1):101-11. PubMed ID: 12383754
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
