BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

158 related articles for article (PubMed ID: 16800615)

  • 1. Molecular dynamics of apo-adenylate kinase: a principal component analysis.
    Lou H; Cukier RI
    J Phys Chem B; 2006 Jun; 110(25):12796-808. PubMed ID: 16800615
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Apo adenylate kinase encodes its holo form: a principal component and varimax analysis.
    Cukier RI
    J Phys Chem B; 2009 Feb; 113(6):1662-72. PubMed ID: 19159290
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Molecular dynamics of apo-adenylate kinase: a distance replica exchange method for the free energy of conformational fluctuations.
    Lou H; Cukier RI
    J Phys Chem B; 2006 Nov; 110(47):24121-37. PubMed ID: 17125384
    [TBL] [Abstract][Full Text] [Related]  

  • 4. How many atoms are required to characterize accurately trajectory fluctuations of a protein?
    Cukier RI
    J Chem Phys; 2010 Jun; 132(24):245101. PubMed ID: 20590215
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Essential dynamics sampling study of adenylate kinase: comparison to citrate synthase and implication for the hinge and shear mechanisms of domain motions.
    Snow C; Qi G; Hayward S
    Proteins; 2007 May; 67(2):325-37. PubMed ID: 17299745
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Dynamic coupling between the LID and NMP domain motions in the catalytic conversion of ATP and AMP to ADP by adenylate kinase.
    Jana B; Adkar BV; Biswas R; Bagchi B
    J Chem Phys; 2011 Jan; 134(3):035101. PubMed ID: 21261390
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Structure of a mutant adenylate kinase ligated with an ATP-analogue showing domain closure over ATP.
    Schlauderer GJ; Proba K; Schulz GE
    J Mol Biol; 1996 Feb; 256(2):223-7. PubMed ID: 8594191
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Folding funnels and conformational transitions via hinge-bending motions.
    Kumar S; Ma B; Tsai CJ; Wolfson H; Nussinov R
    Cell Biochem Biophys; 1999; 31(2):141-64. PubMed ID: 10593256
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A novel view of domain flexibility in E. coli adenylate kinase based on structural mode-coupling (15)N NMR relaxation.
    Tugarinov V; Shapiro YE; Liang Z; Freed JH; Meirovitch E
    J Mol Biol; 2002 Jan; 315(2):155-70. PubMed ID: 11779236
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The atomistic mechanism of conformational transition in adenylate kinase: a TEE-REX molecular dynamics study.
    Kubitzki MB; de Groot BL
    Structure; 2008 Aug; 16(8):1175-82. PubMed ID: 18682219
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The closed conformation of a highly flexible protein: the structure of E. coli adenylate kinase with bound AMP and AMPPNP.
    Berry MB; Meador B; Bilderback T; Liang P; Glaser M; Phillips GN
    Proteins; 1994 Jul; 19(3):183-98. PubMed ID: 7937733
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Dynamics in Thermotoga neapolitana adenylate kinase: 15N relaxation and hydrogen-deuterium exchange studies of a hyperthermophilic enzyme highly active at 30 degrees C.
    Krishnamurthy H; Munro K; Yan H; Vieille C
    Biochemistry; 2009 Mar; 48(12):2723-39. PubMed ID: 19220019
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Substrate Binding Specifically Modulates Domain Arrangements in Adenylate Kinase.
    Zeller F; Zacharias M
    Biophys J; 2015 Nov; 109(9):1978-85. PubMed ID: 26536274
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Activation energy of catalysis-related domain motion in E. coli adenylate kinase.
    Shapiro YE; Meirovitch E
    J Phys Chem B; 2006 Jun; 110(23):11519-24. PubMed ID: 16771428
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Computing free energy of a large-scale allosteric transition in adenylate kinase using all atom explicit solvent simulations.
    Potoyan DA; Zhuravlev PI; Papoian GA
    J Phys Chem B; 2012 Feb; 116(5):1709-15. PubMed ID: 22212071
    [TBL] [Abstract][Full Text] [Related]  

  • 16. NMR identification of transient complexes critical to adenylate kinase catalysis.
    Adén J; Wolf-Watz M
    J Am Chem Soc; 2007 Nov; 129(45):14003-12. PubMed ID: 17935333
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Molecular dynamics simulations of domain motions of substrate-free S-adenosyl- L-homocysteine hydrolase in solution.
    Hu C; Fang J; Borchardt RT; Schowen RL; Kuczera K
    Proteins; 2008 Apr; 71(1):131-43. PubMed ID: 17932938
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Single molecule conformational dynamics of adenylate kinase: energy landscape, structural correlations, and transition state ensembles.
    Lu Q; Wang J
    J Am Chem Soc; 2008 Apr; 130(14):4772-83. PubMed ID: 18338887
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Domain closure in adenylate kinase. Joints on either side of two helices close like neighboring fingers.
    Gerstein M; Schulz G; Chothia C
    J Mol Biol; 1993 Jan; 229(2):494-501. PubMed ID: 8429559
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Crystal structure of human adenylate kinase 4 (L171P) suggests the role of hinge region in protein domain motion.
    Liu R; Xu H; Wei Z; Wang Y; Lin Y; Gong W
    Biochem Biophys Res Commun; 2009 Jan; 379(1):92-7. PubMed ID: 19073142
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.