155 related articles for article (PubMed ID: 16803410)
1. Multiprotein DNA looping.
Vilar JM; Saiz L
Phys Rev Lett; 2006 Jun; 96(23):238103. PubMed ID: 16803410
[TBL] [Abstract][Full Text] [Related]
2. Statistical-mechanical theory of DNA looping.
Zhang Y; McEwen AE; Crothers DM; Levene SD
Biophys J; 2006 Mar; 90(6):1903-12. PubMed ID: 16361335
[TBL] [Abstract][Full Text] [Related]
3. Protein-mediated DNA loops: effects of protein bridge size and kinks.
Douarche N; Cocco S
Phys Rev E Stat Nonlin Soft Matter Phys; 2005 Dec; 72(6 Pt 1):061902. PubMed ID: 16485969
[TBL] [Abstract][Full Text] [Related]
4. Modeling DNA unzipping in the presence of bound proteins.
Habib F; Bundschuh R
Phys Rev E Stat Nonlin Soft Matter Phys; 2005 Sep; 72(3 Pt 1):031906. PubMed ID: 16241481
[TBL] [Abstract][Full Text] [Related]
5. Effect of supercoiling on formation of protein-mediated DNA loops.
Purohit PK; Nelson PC
Phys Rev E Stat Nonlin Soft Matter Phys; 2006 Dec; 74(6 Pt 1):061907. PubMed ID: 17280096
[TBL] [Abstract][Full Text] [Related]
6. Mechanism of DNA compaction by yeast mitochondrial protein Abf2p.
Friddle RW; Klare JE; Martin SS; Corzett M; Balhorn R; Baldwin EP; Baskin RJ; Noy A
Biophys J; 2004 Mar; 86(3):1632-9. PubMed ID: 14990490
[TBL] [Abstract][Full Text] [Related]
7. Disruption of protein-mediated DNA looping by tension in the substrate DNA.
Blumberg S; Tkachenko AV; Meiners JC
Biophys J; 2005 Mar; 88(3):1692-701. PubMed ID: 15653717
[TBL] [Abstract][Full Text] [Related]
8. Interplay of Protein Binding Interactions, DNA Mechanics, and Entropy in DNA Looping Kinetics.
Mulligan PJ; Chen YJ; Phillips R; Spakowitz AJ
Biophys J; 2015 Aug; 109(3):618-29. PubMed ID: 26244743
[TBL] [Abstract][Full Text] [Related]
9. Discrete persistent-chain model for protein binding on DNA.
Lam PM; Zhen Y
Phys Rev E Stat Nonlin Soft Matter Phys; 2011 Apr; 83(4 Pt 1):041912. PubMed ID: 21599206
[TBL] [Abstract][Full Text] [Related]
10. Modelling the way Ku binds DNA.
Hu S; Cucinotta FA
Radiat Prot Dosimetry; 2011 Feb; 143(2-4):196-201. PubMed ID: 21196465
[TBL] [Abstract][Full Text] [Related]
11. Geometry of mediating protein affects the probability of loop formation in DNA.
Agrawal NJ; Radhakrishnan R; Purohit PK
Biophys J; 2008 Apr; 94(8):3150-8. PubMed ID: 18192346
[TBL] [Abstract][Full Text] [Related]
12. Facilitated diffusion on confined DNA.
Foffano G; Marenduzzo D; Orlandini E
Phys Rev E Stat Nonlin Soft Matter Phys; 2012 Feb; 85(2 Pt 1):021919. PubMed ID: 22463256
[TBL] [Abstract][Full Text] [Related]
13. Bending affects entropy of semiflexible polymers: Application to protein-DNA complexes.
Rappaport SM; Rabin Y
Phys Rev E Stat Nonlin Soft Matter Phys; 2009 Nov; 80(5 Pt 1):052801. PubMed ID: 20365029
[TBL] [Abstract][Full Text] [Related]
14. Probability of the site juxtaposition determines the rate of protein-mediated DNA looping.
Polikanov YS; Bondarenko VA; Tchernaenko V; Jiang YI; Lutter LC; Vologodskii A; Studitsky VM
Biophys J; 2007 Oct; 93(8):2726-31. PubMed ID: 17573434
[TBL] [Abstract][Full Text] [Related]
15. Facilitated diffusion of DNA-binding proteins: Simulation of large systems.
Merlitz H; Klenin KV; Wu CX; Langowski J
J Chem Phys; 2006 Jul; 125(1):014906. PubMed ID: 16863332
[TBL] [Abstract][Full Text] [Related]
16. Fast-scanning atomic force microscopy reveals the molecular mechanism of DNA cleavage by ApaI endonuclease.
Yokokawa M; Yoshimura SH; Naito Y; Ando T; Yagi A; Sakai N; Takeyasu K
IEE Proc Nanobiotechnol; 2006 Aug; 153(4):60-6. PubMed ID: 16948489
[TBL] [Abstract][Full Text] [Related]
17. Packaging effects on site-specific DNA-protein interactions.
Murugan R
Phys Rev E Stat Nonlin Soft Matter Phys; 2009 Jun; 79(6 Pt 1):061920. PubMed ID: 19658537
[TBL] [Abstract][Full Text] [Related]
18. Role of chain entropy in an analytic model of protein binding in single-DNA stretching experiments.
Lam PM; Neumann RM
Phys Rev E Stat Nonlin Soft Matter Phys; 2011 Sep; 84(3 Pt 1):032901. PubMed ID: 22060437
[TBL] [Abstract][Full Text] [Related]
19. DNA-protein interactions under random jump conditions.
Murugan R
Phys Rev E Stat Nonlin Soft Matter Phys; 2004 Jan; 69(1 Pt 1):011911. PubMed ID: 14995651
[TBL] [Abstract][Full Text] [Related]
20. Analysis of DNA looping interactions by type II restriction enzymes that require two copies of their recognition sites.
Milsom SE; Halford SE; Embleton ML; Szczelkun MD
J Mol Biol; 2001 Aug; 311(3):515-27. PubMed ID: 11493005
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]