These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

200 related articles for article (PubMed ID: 16803615)

  • 1. Novel knowledge-based mean force potential at the profile level.
    Dong Q; Wang X; Lin L
    BMC Bioinformatics; 2006 Jun; 7():324. PubMed ID: 16803615
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Novel nonlinear knowledge-based mean force potentials based on machine learning.
    Dong Q; Zhou S
    IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(2):476-86. PubMed ID: 20820079
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A pairwise residue contact area-based mean force potential for discrimination of native protein structure.
    Arab S; Sadeghi M; Eslahchi C; Pezeshk H; Sheari A
    BMC Bioinformatics; 2010 Jan; 11():16. PubMed ID: 20064218
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Statistical potentials for fold assessment.
    Melo F; Sánchez R; Sali A
    Protein Sci; 2002 Feb; 11(2):430-48. PubMed ID: 11790853
    [TBL] [Abstract][Full Text] [Related]  

  • 5. DECK: Distance and environment-dependent, coarse-grained, knowledge-based potentials for protein-protein docking.
    Liu S; Vakser IA
    BMC Bioinformatics; 2011 Jul; 12():280. PubMed ID: 21745398
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A distance-dependent atomic knowledge-based potential for improved protein structure selection.
    Lu H; Skolnick J
    Proteins; 2001 Aug; 44(3):223-32. PubMed ID: 11455595
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Random Forest Refinement of the KECSA2 Knowledge-Based Scoring Function for Protein Decoy Detection.
    Pei J; Zheng Z; Merz KM
    J Chem Inf Model; 2019 May; 59(5):1919-1929. PubMed ID: 30726079
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Domain boundary prediction based on profile domain linker propensity index.
    Dong Q; Wang X; Lin L; Xu Z
    Comput Biol Chem; 2006 Apr; 30(2):127-33. PubMed ID: 16531120
    [TBL] [Abstract][Full Text] [Related]  

  • 9. An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference state.
    Zhang C; Liu S; Zhou H; Zhou Y
    Protein Sci; 2004 Feb; 13(2):400-11. PubMed ID: 14739325
    [TBL] [Abstract][Full Text] [Related]  

  • 10. ANDIS: an atomic angle- and distance-dependent statistical potential for protein structure quality assessment.
    Yu Z; Yao Y; Deng H; Yi M
    BMC Bioinformatics; 2019 Jun; 20(1):299. PubMed ID: 31159742
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Statistical potential-based amino acid similarity matrices for aligning distantly related protein sequences.
    Tan YH; Huang H; Kihara D
    Proteins; 2006 Aug; 64(3):587-600. PubMed ID: 16799934
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Improved protein structure selection using decoy-dependent discriminatory functions.
    Wang K; Fain B; Levitt M; Samudrala R
    BMC Struct Biol; 2004 Jun; 4():8. PubMed ID: 15207004
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Diverse effects of distance cutoff and residue interval on the performance of distance-dependent atom-pair potential in protein structure prediction.
    Yao Y; Gui R; Liu Q; Yi M; Deng H
    BMC Bioinformatics; 2017 Dec; 18(1):542. PubMed ID: 29221443
    [TBL] [Abstract][Full Text] [Related]  

  • 14. DescFold: a web server for protein fold recognition.
    Yan RX; Si JN; Wang C; Zhang Z
    BMC Bioinformatics; 2009 Dec; 10():416. PubMed ID: 20003426
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ICOSA: A Distance-Dependent, Orientation-Specific Coarse-Grained Contact Potential for Protein Structure Modeling.
    Elhefnawy W; Chen L; Han Y; Li Y
    J Mol Biol; 2015 Jul; 427(15):2562-2576. PubMed ID: 26055539
    [TBL] [Abstract][Full Text] [Related]  

  • 16. On the importance of the distance measures used to train and test knowledge-based potentials for proteins.
    Carlsen M; Koehl P; Røgen P
    PLoS One; 2014; 9(11):e109335. PubMed ID: 25411785
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Novel knowledge-based mean force potential at atomic level.
    Melo F; Feytmans E
    J Mol Biol; 1997 Mar; 267(1):207-22. PubMed ID: 9096219
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Combination of threading potentials and sequence profiles improves fold recognition.
    Panchenko AR; Marchler-Bauer A; Bryant SH
    J Mol Biol; 2000 Mar; 296(5):1319-31. PubMed ID: 10698636
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Protein refolding in silico with atom-based statistical potentials and conformational search using a simple genetic algorithm.
    Fang Q; Shortle D
    J Mol Biol; 2006 Jun; 359(5):1456-67. PubMed ID: 16678202
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction.
    Zhou H; Zhou Y
    Protein Sci; 2002 Nov; 11(11):2714-26. PubMed ID: 12381853
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.