126 related articles for article (PubMed ID: 16819794)
1. Predicting antisense RNAs in the genomes of Escherichia coli and Salmonella typhimurium using promoter-search algorithm PlatProm.
Ozoline ON; Deev AA
J Bioinform Comput Biol; 2006 Apr; 4(2):443-54. PubMed ID: 16819794
[TBL] [Abstract][Full Text] [Related]
2. Intragenic promotor-like sites in the genome of Escherichia coli discovery and functional implication.
Tutukina MN; Shavkunov KS; Masulis IS; Ozoline ON
J Bioinform Comput Biol; 2007 Apr; 5(2B):549-60. PubMed ID: 17636861
[TBL] [Abstract][Full Text] [Related]
3. Antisense transcription is pervasive but rarely conserved in enteric bacteria.
Raghavan R; Sloan DB; Ochman H
mBio; 2012; 3(4):. PubMed ID: 22872780
[TBL] [Abstract][Full Text] [Related]
4. Gains and unexpected lessons from genome-scale promoter mapping.
Shavkunov KS; Masulis IS; Tutukina MN; Deev AA; Ozoline ON
Nucleic Acids Res; 2009 Aug; 37(15):4919-31. PubMed ID: 19528070
[TBL] [Abstract][Full Text] [Related]
5. Discovering cis-regulatory RNAs in Shewanella genomes by Support Vector Machines.
Xu X; Ji Y; Stormo GD
PLoS Comput Biol; 2009 Apr; 5(4):e1000338. PubMed ID: 19343219
[TBL] [Abstract][Full Text] [Related]
6. The trmA promoter has regulatory features and sequence elements in common with the rRNA P1 promoter family of Escherichia coli.
Gustafsson C; Lindström PH; Hagervall TG; Esberg KB; Björk GR
J Bacteriol; 1991 Mar; 173(5):1757-64. PubMed ID: 1999392
[TBL] [Abstract][Full Text] [Related]
7. E. coli promoter prediction using feed-forward neural networks.
Zhang F; Kuo MD; Brunkhors A
Conf Proc IEEE Eng Med Biol Soc; 2006; 2006():2025-7. PubMed ID: 17946085
[TBL] [Abstract][Full Text] [Related]
8. Molecular characterization of the cysJIH promoters of Salmonella typhimurium and Escherichia coli: regulation by cysB protein and N-acetyl-L-serine.
Ostrowski J; Kredich NM
J Bacteriol; 1989 Jan; 171(1):130-40. PubMed ID: 2701932
[TBL] [Abstract][Full Text] [Related]
9. Selection for unequal densities of sigma70 promoter-like signals in different regions of large bacterial genomes.
Huerta AM; Francino MP; Morett E; Collado-Vides J
PLoS Genet; 2006 Nov; 2(11):e185. PubMed ID: 17096598
[TBL] [Abstract][Full Text] [Related]
10. SIGffRid: a tool to search for sigma factor binding sites in bacterial genomes using comparative approach and biologically driven statistics.
Touzain F; Schbath S; Debled-Rennesson I; Aigle B; Kucherov G; Leblond P
BMC Bioinformatics; 2008 Jan; 9():73. PubMed ID: 18237374
[TBL] [Abstract][Full Text] [Related]
11. Analysis and comparison of the internal promoter, pE, of the ilvGMEDA operons from Escherichia coli K-12 and Salmonella typhimurium.
Lopes JM; Lawther RP
Nucleic Acids Res; 1986 Mar; 14(6):2779-98. PubMed ID: 3008097
[TBL] [Abstract][Full Text] [Related]
12. PSoL: a positive sample only learning algorithm for finding non-coding RNA genes.
Wang C; Ding C; Meraz RF; Holbrook SR
Bioinformatics; 2006 Nov; 22(21):2590-6. PubMed ID: 16945945
[TBL] [Abstract][Full Text] [Related]
13. Nucleotide sequence of the hexA gene for DNA mismatch repair in Streptococcus pneumoniae and homology of hexA to mutS of Escherichia coli and Salmonella typhimurium.
Priebe SD; Hadi SM; Greenberg B; Lacks SA
J Bacteriol; 1988 Jan; 170(1):190-6. PubMed ID: 3275608
[TBL] [Abstract][Full Text] [Related]
14. An algorithm for detecting homologues of known structured RNAs in genomes.
Le SY; Maizel JV; Zhang K
Proc IEEE Comput Syst Bioinform Conf; 2004; ():300-10. PubMed ID: 16448023
[TBL] [Abstract][Full Text] [Related]
15. [Antisense transcription within the hns locus of Escherichia coli].
Tututkina MN; Shavkunov KS; Masulis IS; Ozolin' ON
Mol Biol (Mosk); 2010; 44(3):497-506. PubMed ID: 20608174
[TBL] [Abstract][Full Text] [Related]
16. ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles.
Abeel T; Saeys Y; Rouzé P; Van de Peer Y
Bioinformatics; 2008 Jul; 24(13):i24-31. PubMed ID: 18586720
[TBL] [Abstract][Full Text] [Related]
17. Identification and sequence analysis of lpfABCDE, a putative fimbrial operon of Salmonella typhimurium.
Bäumler AJ; Heffron F
J Bacteriol; 1995 Apr; 177(8):2087-97. PubMed ID: 7721701
[TBL] [Abstract][Full Text] [Related]
18. Transcription of the glutamyl-tRNA reductase (hemA) gene in Salmonella typhimurium and Escherichia coli: role of the hemA P1 promoter and the arcA gene product.
Choi P; Wang L; Archer CD; Elliott T
J Bacteriol; 1996 Feb; 178(3):638-46. PubMed ID: 8550494
[TBL] [Abstract][Full Text] [Related]
19. Characterization of the hemA-prs region of the Escherichia coli and Salmonella typhimurium chromosomes: identification of two open reading frames and implications for prs expression.
Post DA; Hove-Jensen B; Switzer RL
J Gen Microbiol; 1993 Feb; 139(2):259-66. PubMed ID: 7679718
[TBL] [Abstract][Full Text] [Related]
20. DNA sequences of the cysK regions of Salmonella typhimurium and Escherichia coli and linkage of the cysK regions to ptsH.
Byrne CR; Monroe RS; Ward KA; Kredich NM
J Bacteriol; 1988 Jul; 170(7):3150-7. PubMed ID: 3290198
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
