BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

207 related articles for article (PubMed ID: 16819804)

  • 1. RNAKinetics: a web server that models secondary structure kinetics of an elongating RNA.
    Danilova LV; Pervouchine DD; Favorov AV; Mironov AA
    J Bioinform Comput Biol; 2006 Apr; 4(2):589-96. PubMed ID: 16819804
    [TBL] [Abstract][Full Text] [Related]  

  • 2. INFO-RNA--a server for fast inverse RNA folding satisfying sequence constraints.
    Busch A; Backofen R
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W310-3. PubMed ID: 17452349
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Structure clustering features on the Sfold Web server.
    Chan CY; Lawrence CE; Ding Y
    Bioinformatics; 2005 Oct; 21(20):3926-8. PubMed ID: 16109749
    [TBL] [Abstract][Full Text] [Related]  

  • 4. RNALOSS: a web server for RNA locally optimal secondary structures.
    Clote P
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W600-4. PubMed ID: 15980545
    [TBL] [Abstract][Full Text] [Related]  

  • 5. RNAshapes: an integrated RNA analysis package based on abstract shapes.
    Steffen P; Voss B; Rehmsmeier M; Reeder J; Giegerich R
    Bioinformatics; 2006 Feb; 22(4):500-3. PubMed ID: 16357029
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Vienna RNA secondary structure server.
    Hofacker IL
    Nucleic Acids Res; 2003 Jul; 31(13):3429-31. PubMed ID: 12824340
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Visualization of barrier tree sequences.
    Heine C; Scheuermann G; Flamm C; Hofacker IL; Stadler PF
    IEEE Trans Vis Comput Graph; 2006; 12(5):781-8. PubMed ID: 17080800
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Mfold web server for nucleic acid folding and hybridization prediction.
    Zuker M
    Nucleic Acids Res; 2003 Jul; 31(13):3406-15. PubMed ID: 12824337
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Rtools: a web server for various secondary structural analyses on single RNA sequences.
    Hamada M; Ono Y; Kiryu H; Sato K; Kato Y; Fukunaga T; Mori R; Asai K
    Nucleic Acids Res; 2016 Jul; 44(W1):W302-7. PubMed ID: 27131356
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Sequence to Structure (S2S): display, manipulate and interconnect RNA data from sequence to structure.
    Jossinet F; Westhof E
    Bioinformatics; 2005 Aug; 21(15):3320-1. PubMed ID: 15905274
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search.
    Havgaard JH; Lyngsø RB; Gorodkin J
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W650-3. PubMed ID: 15980555
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Memory efficient folding algorithms for circular RNA secondary structures.
    Hofacker IL; Stadler PF
    Bioinformatics; 2006 May; 22(10):1172-6. PubMed ID: 16452114
    [TBL] [Abstract][Full Text] [Related]  

  • 13. JViz.Rna--a Java tool for RNA secondary structure visualization.
    Wiese KC; Glen E; Vasudevan A
    IEEE Trans Nanobioscience; 2005 Sep; 4(3):212-8. PubMed ID: 16220684
    [TBL] [Abstract][Full Text] [Related]  

  • 14. RNA secondary structure analysis using the Vienna RNA package.
    Hofacker IL
    Curr Protoc Bioinformatics; 2004 Feb; Chapter 12():Unit 12.2. PubMed ID: 18428716
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Predicting RNA structure using mutual information.
    Freyhult E; Moulton V; Gardner P
    Appl Bioinformatics; 2005; 4(1):53-9. PubMed ID: 16000013
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots.
    Xayaphoummine A; Bucher T; Isambert H
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W605-10. PubMed ID: 15980546
    [TBL] [Abstract][Full Text] [Related]  

  • 17. taveRNA: a web suite for RNA algorithms and applications.
    Aksay C; Salari R; Karakoc E; Alkan C; Sahinalp SC
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W325-9. PubMed ID: 17488837
    [TBL] [Abstract][Full Text] [Related]  

  • 18. CONTRAfold: RNA secondary structure prediction without physics-based models.
    Do CB; Woods DA; Batzoglou S
    Bioinformatics; 2006 Jul; 22(14):e90-8. PubMed ID: 16873527
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Ribostral: an RNA 3D alignment analyzer and viewer based on basepair isostericities.
    Mokdad A; Leontis NB
    Bioinformatics; 2006 Sep; 22(17):2168-70. PubMed ID: 16820430
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Pfold: RNA secondary structure prediction using stochastic context-free grammars.
    Knudsen B; Hein J
    Nucleic Acids Res; 2003 Jul; 31(13):3423-8. PubMed ID: 12824339
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.