132 related articles for article (PubMed ID: 16819873)
1. Docking of photosystem I subunit C using a constrained geometric simulation.
Jolley CC; Wells SA; Hespenheide BM; Thorpe MF; Fromme P
J Am Chem Soc; 2006 Jul; 128(27):8803-12. PubMed ID: 16819873
[TBL] [Abstract][Full Text] [Related]
2. An efficient molecular docking using conformational space annealing.
Lee K; Czaplewski C; Kim SY; Lee J
J Comput Chem; 2005 Jan; 26(1):78-87. PubMed ID: 15538770
[TBL] [Abstract][Full Text] [Related]
3. Unique constitution of photosystem I with a novel subunit in the cyanobacterium Gloeobacter violaceus PCC 7421.
Inoue H; Tsuchiya T; Satoh S; Miyashita H; Kaneko T; Tabata S; Tanaka A; Mimuro M
FEBS Lett; 2004 Dec; 578(3):275-9. PubMed ID: 15589832
[TBL] [Abstract][Full Text] [Related]
4. RosettaDock in CAPRI rounds 6-12.
Wang C; Schueler-Furman O; Andre I; London N; Fleishman SJ; Bradley P; Qian B; Baker D
Proteins; 2007 Dec; 69(4):758-63. PubMed ID: 17671979
[TBL] [Abstract][Full Text] [Related]
5. Docking macromolecules with flexible segments.
Bastard K; Thureau A; Lavery R; Prévost C
J Comput Chem; 2003 Nov; 24(15):1910-20. PubMed ID: 14515373
[TBL] [Abstract][Full Text] [Related]
6. A multidomain flexible docking approach to deal with large conformational changes in the modeling of biomolecular complexes.
Karaca E; Bonvin AM
Structure; 2011 Apr; 19(4):555-65. PubMed ID: 21481778
[TBL] [Abstract][Full Text] [Related]
7. Monte Carlo docking with ubiquitin.
Cummings MD; Hart TN; Read RJ
Protein Sci; 1995 May; 4(5):885-99. PubMed ID: 7663344
[TBL] [Abstract][Full Text] [Related]
8. Docking of protein molecular surfaces with evolutionary trace analysis.
Kanamori E; Murakami Y; Tsuchiya Y; Standley DM; Nakamura H; Kinoshita K
Proteins; 2007 Dec; 69(4):832-8. PubMed ID: 17803239
[TBL] [Abstract][Full Text] [Related]
9. Constrained geometric simulation of diffusive motion in proteins.
Wells S; Menor S; Hespenheide B; Thorpe MF
Phys Biol; 2005 Nov; 2(4):S127-36. PubMed ID: 16280618
[TBL] [Abstract][Full Text] [Related]
10. Robotic path planning and protein complex modeling considering low frequency intra-molecular loop and domain motions.
Del Carpio CA; Qiang P; Ichiishi E; Tsuboi H; Koyama M; Hatakeyama N; Endou A; Takaba H; Kubo M; Miyamoto A
Genome Inform; 2006; 17(2):270-8. PubMed ID: 17503399
[TBL] [Abstract][Full Text] [Related]
11. A path planning approach for computing large-amplitude motions of flexible molecules.
Cortés J; Siméon T; Ruiz de Angulo V; Guieysse D; Remaud-Siméon M; Tran V
Bioinformatics; 2005 Jun; 21 Suppl 1():i116-25. PubMed ID: 15961448
[TBL] [Abstract][Full Text] [Related]
12. Ensemble docking of multiple protein structures: considering protein structural variations in molecular docking.
Huang SY; Zou X
Proteins; 2007 Feb; 66(2):399-421. PubMed ID: 17096427
[TBL] [Abstract][Full Text] [Related]
13. Understanding of the binding interface between PsaC and the PsaA/PsaB heterodimer in photosystem I.
Jagannathan B; Golbeck JH
Biochemistry; 2009 Jun; 48(23):5405-16. PubMed ID: 19432395
[TBL] [Abstract][Full Text] [Related]
14. Docking and molecular dynamics simulation of the Azurin-Cytochrome c551 electron transfer complex.
Bizzarri AR; Brunori E; Bonanni B; Cannistraro S
J Mol Recognit; 2007; 20(2):122-31. PubMed ID: 17407190
[TBL] [Abstract][Full Text] [Related]
15. Modeling AAA+ ring complexes from monomeric structures.
Diemand AV; Lupas AN
J Struct Biol; 2006 Oct; 156(1):230-43. PubMed ID: 16765605
[TBL] [Abstract][Full Text] [Related]
16. DOCKGROUND system of databases for protein recognition studies: unbound structures for docking.
Gao Y; Douguet D; Tovchigrechko A; Vakser IA
Proteins; 2007 Dec; 69(4):845-51. PubMed ID: 17803215
[TBL] [Abstract][Full Text] [Related]
17. Thermally induced phase transition in helical comblike poly(beta-peptide)s: an atomistic simulation.
Zanuy D; Alemán C; Laso M; Muñoz-Guerra S
J Comput Chem; 2003 Apr; 24(6):770-8. PubMed ID: 12666169
[TBL] [Abstract][Full Text] [Related]
18. Grand canonical Monte Carlo simulations of water in protein environments.
Woo HJ; Dinner AR; Roux B
J Chem Phys; 2004 Oct; 121(13):6392-400. PubMed ID: 15446937
[TBL] [Abstract][Full Text] [Related]
19. Sampling small-scale and large-scale conformational changes in proteins and molecular complexes.
Yun MR; Mousseau N; Derreumaux P
J Chem Phys; 2007 Mar; 126(10):105101. PubMed ID: 17362087
[TBL] [Abstract][Full Text] [Related]
20. Simulating proteins at constant pH: An approach combining molecular dynamics and Monte Carlo simulation.
Bürgi R; Kollman PA; Van Gunsteren WF
Proteins; 2002 Jun; 47(4):469-80. PubMed ID: 12001225
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]