These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

180 related articles for article (PubMed ID: 16820050)

  • 1. Saturating representation of loop conformational fragments in structure databanks.
    Fernandez-Fuentes N; Fiser A
    BMC Struct Biol; 2006 Jul; 6():15. PubMed ID: 16820050
    [TBL] [Abstract][Full Text] [Related]  

  • 2. New efficient statistical sequence-dependent structure prediction of short to medium-sized protein loops based on an exhaustive loop classification.
    Wojcik J; Mornon JP; Chomilier J
    J Mol Biol; 1999 Jun; 289(5):1469-90. PubMed ID: 10373380
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A supersecondary structure library and search algorithm for modeling loops in protein structures.
    Fernandez-Fuentes N; Oliva B; Fiser A
    Nucleic Acids Res; 2006; 34(7):2085-97. PubMed ID: 16617149
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Analysis, clustering and prediction of the conformation of short and medium size loops connecting regular secondary structures.
    Rufino SD; Donate LE; Canard L; Blundell TL
    Pac Symp Biocomput; 1996; ():570-89. PubMed ID: 9390259
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Conformational analysis and clustering of short and medium size loops connecting regular secondary structures: a database for modeling and prediction.
    Donate LE; Rufino SD; Canard LH; Blundell TL
    Protein Sci; 1996 Dec; 5(12):2600-16. PubMed ID: 8976569
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Protein loops on structurally similar scaffolds: database and conformational analysis.
    Li W; Liu Z; Lai L
    Biopolymers; 1999 May; 49(6):481-95. PubMed ID: 10193195
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Mining protein loops using a structural alphabet and statistical exceptionality.
    Regad L; Martin J; Nuel G; Camproux AC
    BMC Bioinformatics; 2010 Feb; 11():75. PubMed ID: 20132552
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A Consensus Data Mining secondary structure prediction by combining GOR V and Fragment Database Mining.
    Sen TZ; Cheng H; Kloczkowski A; Jernigan RL
    Protein Sci; 2006 Nov; 15(11):2499-506. PubMed ID: 17001039
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Dynameomics: data-driven methods and models for utilizing large-scale protein structure repositories for improving fragment-based loop prediction.
    Rysavy SJ; Beck DA; Daggett V
    Protein Sci; 2014 Nov; 23(11):1584-95. PubMed ID: 25142412
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Improved protein loop prediction from sequence alone.
    Burke DF; Deane CM
    Protein Eng; 2001 Jul; 14(7):473-8. PubMed ID: 11522920
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ArchPRED: a template based loop structure prediction server.
    Fernandez-Fuentes N; Zhai J; Fiser A
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W173-6. PubMed ID: 16844985
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Clustering and percolation in protein loop structures.
    Peng X; He J; Niemi AJ
    BMC Struct Biol; 2015 Oct; 15():22. PubMed ID: 26510704
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Modeling protein loops with knowledge-based prediction of sequence-structure alignment.
    Peng HP; Yang AS
    Bioinformatics; 2007 Nov; 23(21):2836-42. PubMed ID: 17827204
    [TBL] [Abstract][Full Text] [Related]  

  • 14. PDB-based protein loop prediction: parameters for selection and methods for optimization.
    van Vlijmen HW; Karplus M
    J Mol Biol; 1997 Apr; 267(4):975-1001. PubMed ID: 9135125
    [TBL] [Abstract][Full Text] [Related]  

  • 15. The energy of formation of internal loops in triple-helical collagen polypeptides.
    Paterlini MG; Némethy G; Scheraga HA
    Biopolymers; 1995 Jun; 35(6):607-19. PubMed ID: 7766826
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Protein-segment universe exhibiting transitions at intermediate segment length in conformational subspaces.
    Ikeda K; Hirokawa T; Higo J; Tomii K
    BMC Struct Biol; 2008 Aug; 8():37. PubMed ID: 18700043
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A novel exhaustive search algorithm for predicting the conformation of polypeptide segments in proteins.
    Deane CM; Blundell TL
    Proteins; 2000 Jul; 40(1):135-44. PubMed ID: 10813838
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Exploring the conformational space of protein loops using a mean field technique with MOLS sampling.
    Kanagasabai V; Arunachalam J; Prasad PA; Gautham N
    Proteins; 2007 Jun; 67(4):908-21. PubMed ID: 17357159
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Loops In Proteins (LIP)--a comprehensive loop database for homology modelling.
    Michalsky E; Goede A; Preissner R
    Protein Eng; 2003 Dec; 16(12):979-85. PubMed ID: 14983078
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Characterizing the existing and potential structural space of proteins by large-scale multiple loop permutations.
    Dai L; Zhou Y
    J Mol Biol; 2011 May; 408(3):585-95. PubMed ID: 21376059
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.