These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

147 related articles for article (PubMed ID: 16834346)

  • 1. Do collective atomic fluctuations account for cooperative effects? Molecular dynamics studies of the U1A-RNA complex.
    Kormos BL; Baranger AM; Beveridge DL
    J Am Chem Soc; 2006 Jul; 128(28):8992-3. PubMed ID: 16834346
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A study of collective atomic fluctuations and cooperativity in the U1A-RNA complex based on molecular dynamics simulations.
    Kormos BL; Baranger AM; Beveridge DL
    J Struct Biol; 2007 Mar; 157(3):500-13. PubMed ID: 17194603
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Investigation of a conserved stacking interaction in target site recognition by the U1A protein.
    Shiels JC; Tuite JB; Nolan SJ; Baranger AM
    Nucleic Acids Res; 2002 Jan; 30(2):550-8. PubMed ID: 11788718
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Molecular dynamics and thermodynamics of protein-RNA interactions: mutation of a conserved aromatic residue modifies stacking interactions and structural adaptation in the U1A-stem loop 2 RNA complex.
    Blakaj DM; McConnell KJ; Beveridge DL; Baranger AM
    J Am Chem Soc; 2001 Mar; 123(11):2548-51. PubMed ID: 11456923
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Molecular dynamics simulation studies of induced fit and conformational capture in U1A-RNA binding: do molecular substates code for specificity?
    Pitici F; Beveridge DL; Baranger AM
    Biopolymers; 2002 Dec; 65(6):424-35. PubMed ID: 12434430
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Binding of U1A protein changes RNA dynamics as observed by 13C NMR relaxation studies.
    Shajani Z; Drobny G; Varani G
    Biochemistry; 2007 May; 46(20):5875-83. PubMed ID: 17469848
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Changes in side-chain and backbone dynamics identify determinants of specificity in RNA recognition by human U1A protein.
    Mittermaier A; Varani L; Muhandiram DR; Kay LE; Varani G
    J Mol Biol; 1999 Dec; 294(4):967-79. PubMed ID: 10588900
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The NMR structure of the 38 kDa U1A protein - PIE RNA complex reveals the basis of cooperativity in regulation of polyadenylation by human U1A protein.
    Varani L; Gunderson SI; Mattaj IW; Kay LE; Neuhaus D; Varani G
    Nat Struct Biol; 2000 Apr; 7(4):329-35. PubMed ID: 10742179
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Molecular dynamics simulations of the complex between human U1A protein and hairpin II of U1 small nuclear RNA and of free RNA in solution.
    Tang Y; Nilsson L
    Biophys J; 1999 Sep; 77(3):1284-305. PubMed ID: 10465742
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Correlated motions in the U1 snRNA stem/loop 2:U1A RBD1 complex.
    Showalter SA; Hall KB
    Biophys J; 2005 Sep; 89(3):2046-58. PubMed ID: 15951381
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Design of an adenosine analogue that selectively improves the affinity of a mutant U1A protein for RNA.
    Zhao Y; Baranger AM
    J Am Chem Soc; 2003 Mar; 125(9):2480-8. PubMed ID: 12603136
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Molecular dynamics studies of U1A-RNA complexes.
    Reyes CM; Kollman PA
    RNA; 1999 Feb; 5(2):235-44. PubMed ID: 10024175
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Characterization of the dynamics of an essential helix in the U1A protein by time-resolved fluorescence measurements.
    Anunciado D; Agumeh M; Kormos BL; Beveridge DL; Knee JL; Baranger AM
    J Phys Chem B; 2008 May; 112(19):6122-30. PubMed ID: 18293956
    [TBL] [Abstract][Full Text] [Related]  

  • 14. 13C NMR relaxation studies of RNA base and ribose nuclei reveal a complex pattern of motions in the RNA binding site for human U1A protein.
    Shajani Z; Varani G
    J Mol Biol; 2005 Jun; 349(4):699-715. PubMed ID: 15890361
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Structure and thermodynamics of RNA-protein binding: using molecular dynamics and free energy analyses to calculate the free energies of binding and conformational change.
    Reyes CM; Kollman PA
    J Mol Biol; 2000 Apr; 297(5):1145-58. PubMed ID: 10764579
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Affinity and specificity of protein U1A-RNA complex formation based on an additive component free energy model.
    Kormos BL; Benitex Y; Baranger AM; Beveridge DL
    J Mol Biol; 2007 Aug; 371(5):1405-19. PubMed ID: 17603075
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Specificity of ribonucleoprotein interaction determined by RNA folding during complex formulation.
    Allain FH; Gubser CC; Howe PW; Nagai K; Neuhaus D; Varani G
    Nature; 1996 Apr; 380(6575):646-50. PubMed ID: 8602269
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Structural basis of the RNA-binding specificity of human U1A protein.
    Allain FH; Howe PW; Neuhaus D; Varani G
    EMBO J; 1997 Sep; 16(18):5764-72. PubMed ID: 9312034
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Interpreting the Dynamics of Binding Interactions of snRNA and U1A Using a Coarse-Grained Model.
    Han Z; Shao Q; Gong W; Wang S; Su J; Li C; Zhang Y
    Biophys J; 2019 May; 116(9):1625-1636. PubMed ID: 30975455
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Multistep kinetics of the U1A-SL2 RNA complex dissociation.
    Anunciado D; Dhar A; Gruebele M; Baranger AM
    J Mol Biol; 2011 May; 408(5):896-908. PubMed ID: 21419778
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.