These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

244 related articles for article (PubMed ID: 16844989)

  • 1. transFold: a web server for predicting the structure and residue contacts of transmembrane beta-barrels.
    Waldispühl J; Berger B; Clote P; Steyaert JM
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W189-93. PubMed ID: 16844989
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Predicting transmembrane beta-barrels and interstrand residue interactions from sequence.
    Waldispühl J; Berger B; Clote P; Steyaert JM
    Proteins; 2006 Oct; 65(1):61-74. PubMed ID: 16858668
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Modeling ensembles of transmembrane beta-barrel proteins.
    Waldispühl J; O'Donnell CW; Devadas S; Clote P; Berger B
    Proteins; 2008 May; 71(3):1097-112. PubMed ID: 18004792
    [TBL] [Abstract][Full Text] [Related]  

  • 4. TMBpro: secondary structure, beta-contact and tertiary structure prediction of transmembrane beta-barrel proteins.
    Randall A; Cheng J; Sweredoski M; Baldi P
    Bioinformatics; 2008 Feb; 24(4):513-20. PubMed ID: 18006547
    [TBL] [Abstract][Full Text] [Related]  

  • 5. PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins.
    Bagos PG; Liakopoulos TD; Spyropoulos IC; Hamodrakas SJ
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W400-4. PubMed ID: 15215419
    [TBL] [Abstract][Full Text] [Related]  

  • 6. TMBETA-NET: discrimination and prediction of membrane spanning beta-strands in outer membrane proteins.
    Gromiha MM; Ahmad S; Suwa M
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W164-7. PubMed ID: 15980447
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method.
    Bagos PG; Liakopoulos TD; Hamodrakas SJ
    BMC Bioinformatics; 2005 Jan; 6():7. PubMed ID: 15647112
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Neural network-based prediction of transmembrane beta-strand segments in outer membrane proteins.
    Gromiha MM; Ahmad S; Suwa M
    J Comput Chem; 2004 Apr; 25(5):762-7. PubMed ID: 14978719
    [TBL] [Abstract][Full Text] [Related]  

  • 9. TMB-Hunt: a web server to screen sequence sets for transmembrane beta-barrel proteins.
    Garrow AG; Agnew A; Westhead DR
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W188-92. PubMed ID: 15980452
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Prediction of membrane spanning segments and topology in beta-barrel membrane proteins at better accuracy.
    Ou YY; Chen SA; Gromiha MM
    J Comput Chem; 2010 Jan; 31(1):217-23. PubMed ID: 19421989
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins.
    Bagos PG; Liakopoulos TD; Spyropoulos IC; Hamodrakas SJ
    BMC Bioinformatics; 2004 Mar; 5():29. PubMed ID: 15070403
    [TBL] [Abstract][Full Text] [Related]  

  • 12. TMB-Hunt: an amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins.
    Garrow AG; Agnew A; Westhead DR
    BMC Bioinformatics; 2005 Mar; 6():56. PubMed ID: 15769290
    [TBL] [Abstract][Full Text] [Related]  

  • 13. beta-Barrel transmembrane proteins: Geometric modelling, detection of transmembrane region, and structural properties.
    Valavanis IK; Bagos PG; Emiris IZ
    Comput Biol Chem; 2006 Dec; 30(6):416-24. PubMed ID: 17097352
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A consensus algorithm to screen genomes for novel families of transmembrane beta barrel proteins.
    Garrow AG; Westhead DR
    Proteins; 2007 Oct; 69(1):8-18. PubMed ID: 17557332
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Interstrand pairing patterns in beta-barrel membrane proteins: the positive-outside rule, aromatic rescue, and strand registration prediction.
    Jackups R; Liang J
    J Mol Biol; 2005 Dec; 354(4):979-93. PubMed ID: 16277990
    [TBL] [Abstract][Full Text] [Related]  

  • 16. kPROT: a knowledge-based scale for the propensity of residue orientation in transmembrane segments. Application to membrane protein structure prediction.
    Pilpel Y; Ben-Tal N; Lancet D
    J Mol Biol; 1999 Dec; 294(4):921-35. PubMed ID: 10588897
    [TBL] [Abstract][Full Text] [Related]  

  • 17. TMBETA-GENOME: database for annotated beta-barrel membrane proteins in genomic sequences.
    Gromiha MM; Yabuki Y; Kundu S; Suharnan S; Suwa M
    Nucleic Acids Res; 2007 Jan; 35(Database issue):D314-6. PubMed ID: 17088282
    [TBL] [Abstract][Full Text] [Related]  

  • 18. PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins.
    Bigelow H; Rost B
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W186-8. PubMed ID: 16844988
    [TBL] [Abstract][Full Text] [Related]  

  • 19. ZPRED: predicting the distance to the membrane center for residues in alpha-helical membrane proteins.
    Granseth E; Viklund H; Elofsson A
    Bioinformatics; 2006 Jul; 22(14):e191-6. PubMed ID: 16873471
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Statistical analysis and exposure status classification of transmembrane beta barrel residues.
    Hayat S; Park Y; Helms V
    Comput Biol Chem; 2011 Apr; 35(2):96-107. PubMed ID: 21531175
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.