196 related articles for article (PubMed ID: 16845031)
1. PDB_Hydro: incorporating dipolar solvents with variable density in the Poisson-Boltzmann treatment of macromolecule electrostatics.
Azuara C; Lindahl E; Koehl P; Orland H; Delarue M
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W38-42. PubMed ID: 16845031
[TBL] [Abstract][Full Text] [Related]
2. Incorporating dipolar solvents with variable density in Poisson-Boltzmann electrostatics.
Azuara C; Orland H; Bon M; Koehl P; Delarue M
Biophys J; 2008 Dec; 95(12):5587-605. PubMed ID: 18820239
[TBL] [Abstract][Full Text] [Related]
3. PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations.
Dolinsky TJ; Nielsen JE; McCammon JA; Baker NA
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W665-7. PubMed ID: 15215472
[TBL] [Abstract][Full Text] [Related]
4. SMPBS: Web server for computing biomolecular electrostatics using finite element solvers of size modified Poisson-Boltzmann equation.
Xie Y; Ying J; Xie D
J Comput Chem; 2017 Mar; 38(8):541-552. PubMed ID: 28052351
[TBL] [Abstract][Full Text] [Related]
5. PCE: web tools to compute protein continuum electrostatics.
Miteva MA; Tufféry P; Villoutreix BO
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W372-5. PubMed ID: 15980492
[TBL] [Abstract][Full Text] [Related]
6. Patch Finder Plus (PFplus): a web server for extracting and displaying positive electrostatic patches on protein surfaces.
Shazman S; Celniker G; Haber O; Glaser F; Mandel-Gutfreund Y
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W526-30. PubMed ID: 17537808
[TBL] [Abstract][Full Text] [Related]
7. Electrostatics calculations: latest methodological advances.
Koehl P
Curr Opin Struct Biol; 2006 Apr; 16(2):142-51. PubMed ID: 16540310
[TBL] [Abstract][Full Text] [Related]
8. eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shape.
Kinoshita K; Murakami Y; Nakamura H
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W398-402. PubMed ID: 17567616
[TBL] [Abstract][Full Text] [Related]
9. A super-Gaussian Poisson-Boltzmann model for electrostatic free energy calculation: smooth dielectric distribution for protein cavities and in both water and vacuum states.
Hazra T; Ahmed Ullah S; Wang S; Alexov E; Zhao S
J Math Biol; 2019 Jul; 79(2):631-672. PubMed ID: 31030299
[TBL] [Abstract][Full Text] [Related]
10. Prediction of protein-protein interaction sites using electrostatic desolvation profiles.
Fiorucci S; Zacharias M
Biophys J; 2010 May; 98(9):1921-30. PubMed ID: 20441756
[TBL] [Abstract][Full Text] [Related]
11. SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces.
Teyra J; Doms A; Schroeder M; Pisabarro MT
BMC Bioinformatics; 2006 Mar; 7():104. PubMed ID: 16512892
[TBL] [Abstract][Full Text] [Related]
12. Continuum molecular electrostatics, salt effects, and counterion binding--a review of the Poisson-Boltzmann theory and its modifications.
Grochowski P; Trylska J
Biopolymers; 2008 Feb; 89(2):93-113. PubMed ID: 17969016
[TBL] [Abstract][Full Text] [Related]
13. Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteins.
Avbelj F
J Mol Biol; 2000 Jul; 300(5):1335-59. PubMed ID: 10903873
[TBL] [Abstract][Full Text] [Related]
14. Features of CPB: a Poisson-Boltzmann solver that uses an adaptive Cartesian grid.
Fenley MO; Harris RC; Mackoy T; Boschitsch AH
J Comput Chem; 2015 Feb; 36(4):235-43. PubMed ID: 25430617
[TBL] [Abstract][Full Text] [Related]
15. PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations.
Dolinsky TJ; Czodrowski P; Li H; Nielsen JE; Jensen JH; Klebe G; Baker NA
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W522-5. PubMed ID: 17488841
[TBL] [Abstract][Full Text] [Related]
16. MolSurfer: A macromolecular interface navigator.
Gabdoulline RR; Wade RC; Walther D
Nucleic Acids Res; 2003 Jul; 31(13):3349-51. PubMed ID: 12824324
[TBL] [Abstract][Full Text] [Related]
17. Energy functions for protein design I: efficient and accurate continuum electrostatics and solvation.
Pokala N; Handel TM
Protein Sci; 2004 Apr; 13(4):925-36. PubMed ID: 15010542
[TBL] [Abstract][Full Text] [Related]
18. SPACE: a suite of tools for protein structure prediction and analysis based on complementarity and environment.
Sobolev V; Eyal E; Gerzon S; Potapov V; Babor M; Prilusky J; Edelman M
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W39-43. PubMed ID: 15980496
[TBL] [Abstract][Full Text] [Related]
19. pKNOT: the protein KNOT web server.
Lai YL; Yen SC; Yu SH; Hwang JK
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W420-4. PubMed ID: 17526524
[TBL] [Abstract][Full Text] [Related]
20. Beyond the continuum: how molecular solvent structure affects electrostatics and hydrodynamics at solid-electrolyte interfaces.
Bonthuis DJ; Netz RR
J Phys Chem B; 2013 Oct; 117(39):11397-413. PubMed ID: 24063251
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
