BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

152 related articles for article (PubMed ID: 16845075)

  • 1. iCR: a web tool to identify conserved targets of a regulatory protein across the multiple related prokaryotic species.
    Ranjan S; Seshadri J; Vindal V; Yellaboina S; Ranjan A
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W584-7. PubMed ID: 16845075
    [TBL] [Abstract][Full Text] [Related]  

  • 2. PredictRegulon: a web server for the prediction of the regulatory protein binding sites and operons in prokaryote genomes.
    Yellaboina S; Seshadri J; Kumar MS; Ranjan A
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W318-20. PubMed ID: 15215402
    [TBL] [Abstract][Full Text] [Related]  

  • 3. SwissRegulon: a database of genome-wide annotations of regulatory sites.
    Pachkov M; Erb I; Molina N; van Nimwegen E
    Nucleic Acids Res; 2007 Jan; 35(Database issue):D127-31. PubMed ID: 17130146
    [TBL] [Abstract][Full Text] [Related]  

  • 4. PREDetector: a new tool to identify regulatory elements in bacterial genomes.
    Hiard S; Marée R; Colson S; Hoskisson PA; Titgemeyer F; van Wezel GP; Joris B; Wehenkel L; Rigali S
    Biochem Biophys Res Commun; 2007 Jun; 357(4):861-4. PubMed ID: 17451648
    [TBL] [Abstract][Full Text] [Related]  

  • 5. RegTransBase--a database of regulatory sequences and interactions in a wide range of prokaryotic genomes.
    Kazakov AE; Cipriano MJ; Novichkov PS; Minovitsky S; Vinogradov DV; Arkin A; Mironov AA; Gelfand MS; Dubchak I
    Nucleic Acids Res; 2007 Jan; 35(Database issue):D407-12. PubMed ID: 17142223
    [TBL] [Abstract][Full Text] [Related]  

  • 6. ExtraTrain: a database of Extragenic regions and Transcriptional information in prokaryotic organisms.
    Pareja E; Pareja-Tobes P; Manrique M; Pareja-Tobes E; Bonal J; Tobes R
    BMC Microbiol; 2006 Mar; 6():29. PubMed ID: 16539733
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens.
    Yan B; Lovley DR; Krushkal J
    Biosystems; 2007; 90(2):421-41. PubMed ID: 17184904
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ODB: a database of operons accumulating known operons across multiple genomes.
    Okuda S; Katayama T; Kawashima S; Goto S; Kanehisa M
    Nucleic Acids Res; 2006 Jan; 34(Database issue):D358-62. PubMed ID: 16381886
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CREME: Cis-Regulatory Module Explorer for the human genome.
    Sharan R; Ben-Hur A; Loots GG; Ovcharenko I
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W253-6. PubMed ID: 15215390
    [TBL] [Abstract][Full Text] [Related]  

  • 10. ConSite: web-based prediction of regulatory elements using cross-species comparison.
    Sandelin A; Wasserman WW; Lenhard B
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W249-52. PubMed ID: 15215389
    [TBL] [Abstract][Full Text] [Related]  

  • 11. MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes.
    Pavesi G; Mereghetti P; Zambelli F; Stefani M; Mauri G; Pesole G
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W566-70. PubMed ID: 16845071
    [TBL] [Abstract][Full Text] [Related]  

  • 12. ABS: a database of Annotated regulatory Binding Sites from orthologous promoters.
    Blanco E; Farré D; Albà MM; Messeguer X; Guigó R
    Nucleic Acids Res; 2006 Jan; 34(Database issue):D63-7. PubMed ID: 16381947
    [TBL] [Abstract][Full Text] [Related]  

  • 13. POXO: a web-enabled tool series to discover transcription factor binding sites.
    Kankainen M; Pehkonen P; Rosenstöm P; Törönen P; Wong G; Holm L
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W534-40. PubMed ID: 16845065
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Dcode.org anthology of comparative genomic tools.
    Loots GG; Ovcharenko I
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W56-64. PubMed ID: 15980535
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ClusterDraw web server: a tool to identify and visualize clusters of binding motifs for transcription factors.
    Papatsenko D
    Bioinformatics; 2007 Apr; 23(8):1032-4. PubMed ID: 17308342
    [TBL] [Abstract][Full Text] [Related]  

  • 16. CONREAL web server: identification and visualization of conserved transcription factor binding sites.
    Berezikov E; Guryev V; Cuppen E
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W447-50. PubMed ID: 15980509
    [TBL] [Abstract][Full Text] [Related]  

  • 17. BAGEL: a web-based bacteriocin genome mining tool.
    de Jong A; van Hijum SA; Bijlsma JJ; Kok J; Kuipers OP
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W273-9. PubMed ID: 16845009
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MycoperonDB: a database of computationally identified operons and transcriptional units in Mycobacteria.
    Ranjan S; Gundu RK; Ranjan A
    BMC Bioinformatics; 2006 Dec; 7 Suppl 5(Suppl 5):S9. PubMed ID: 17254314
    [TBL] [Abstract][Full Text] [Related]  

  • 19. cis-regulatory region analysis using BEARR.
    Vega VB
    Methods Mol Biol; 2006; 338():119-27. PubMed ID: 16888354
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Extending the classification of bacterial transcription factors beyond the helix-turn-helix motif as an alternative approach to discover new cis/trans relationships.
    Rigali S; Schlicht M; Hoskisson P; Nothaft H; Merzbacher M; Joris B; Titgemeyer F
    Nucleic Acids Res; 2004; 32(11):3418-26. PubMed ID: 15247334
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.