401 related articles for article (PubMed ID: 16845081)
1. Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee.
Armougom F; Moretti S; Poirot O; Audic S; Dumas P; Schaeli B; Keduas V; Notredame C
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W604-8. PubMed ID: 16845081
[TBL] [Abstract][Full Text] [Related]
2. 3DCoffee@igs: a web server for combining sequences and structures into a multiple sequence alignment.
Poirot O; Suhre K; Abergel C; O'Toole E; Notredame C
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W37-40. PubMed ID: 15215345
[TBL] [Abstract][Full Text] [Related]
3. The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search.
Havgaard JH; Lyngsø RB; Gorodkin J
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W650-3. PubMed ID: 15980555
[TBL] [Abstract][Full Text] [Related]
4. BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark.
Thompson JD; Koehl P; Ripp R; Poch O
Proteins; 2005 Oct; 61(1):127-36. PubMed ID: 16044462
[TBL] [Abstract][Full Text] [Related]
5. 3DCoffee: combining protein sequences and structures within multiple sequence alignments.
O'Sullivan O; Suhre K; Abergel C; Higgins DG; Notredame C
J Mol Biol; 2004 Jul; 340(2):385-95. PubMed ID: 15201059
[TBL] [Abstract][Full Text] [Related]
6. MyHits: a new interactive resource for protein annotation and domain identification.
Pagni M; Ioannidis V; Cerutti L; Zahn-Zabal M; Jongeneel CV; Falquet L
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W332-5. PubMed ID: 15215405
[TBL] [Abstract][Full Text] [Related]
7. Wurst: a protein threading server with a structural scoring function, sequence profiles and optimized substitution matrices.
Torda AE; Procter JB; Huber T
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W532-5. PubMed ID: 15215443
[TBL] [Abstract][Full Text] [Related]
8. DPANN: improved sequence to structure alignments following fold recognition.
Reinhardt A; Eisenberg D
Proteins; 2004 Aug; 56(3):528-38. PubMed ID: 15229885
[TBL] [Abstract][Full Text] [Related]
9. Increased detection of structural templates using alignments of designed sequences.
Larson SM; Garg A; Desjarlais JR; Pande VS
Proteins; 2003 May; 51(3):390-6. PubMed ID: 12696050
[TBL] [Abstract][Full Text] [Related]
10. Improvement in the accuracy of multiple sequence alignment program MAFFT.
Katoh K; Kuma K; Miyata T; Toh H
Genome Inform; 2005; 16(1):22-33. PubMed ID: 16362903
[TBL] [Abstract][Full Text] [Related]
11. FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties.
Shi J; Blundell TL; Mizuguchi K
J Mol Biol; 2001 Jun; 310(1):243-57. PubMed ID: 11419950
[TBL] [Abstract][Full Text] [Related]
12. The ProDom database of protein domain families: more emphasis on 3D.
Bru C; Courcelle E; Carrère S; Beausse Y; Dalmar S; Kahn D
Nucleic Acids Res; 2005 Jan; 33(Database issue):D212-5. PubMed ID: 15608179
[TBL] [Abstract][Full Text] [Related]
13. The FSSP database of structurally aligned protein fold families.
Holm L; Sander C
Nucleic Acids Res; 1994 Sep; 22(17):3600-9. PubMed ID: 7937067
[TBL] [Abstract][Full Text] [Related]
14. PSI-BLAST-ISS: an intermediate sequence search tool for estimation of the position-specific alignment reliability.
Margelevicius M; Venclovas C
BMC Bioinformatics; 2005 Jul; 6():185. PubMed ID: 16033659
[TBL] [Abstract][Full Text] [Related]
15. e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences.
Krüger J; Sczyrba A; Kurtz S; Giegerich R
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W301-4. PubMed ID: 15215398
[TBL] [Abstract][Full Text] [Related]
16. One-Block CYRCA: an automated procedure for identifying multiple-block alignments from single block queries.
Frenkel-Morgenstern M; Singer A; Bronfeld H; Pietrokovski S
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W281-3. PubMed ID: 15980470
[TBL] [Abstract][Full Text] [Related]
17. YASS: enhancing the sensitivity of DNA similarity search.
Noé L; Kucherov G
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W540-3. PubMed ID: 15980530
[TBL] [Abstract][Full Text] [Related]
18. MOFOID--not only the protein modeling server.
Szczesny P; Wieczorek G; Zielenkiewicz P
Acta Biochim Pol; 2005; 52(1):267-9. PubMed ID: 15827624
[TBL] [Abstract][Full Text] [Related]
19. The HSSP database of protein structure-sequence alignments.
Sander C; Schneider R
Nucleic Acids Res; 1994 Sep; 22(17):3597-9. PubMed ID: 7937066
[TBL] [Abstract][Full Text] [Related]
20. PISCES: recent improvements to a PDB sequence culling server.
Wang G; Dunbrack RL
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W94-8. PubMed ID: 15980589
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]