BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

120 related articles for article (PubMed ID: 16845105)

  • 1. The Path-A metabolic pathway prediction web server.
    Pireddu L; Szafron D; Lu P; Greiner R
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W714-9. PubMed ID: 16845105
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Proteome Analyst: custom predictions with explanations in a web-based tool for high-throughput proteome annotations.
    Szafron D; Lu P; Greiner R; Wishart DS; Poulin B; Eisner R; Lu Z; Anvik J; Macdonell C; Fyshe A; Meeuwis D
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W365-71. PubMed ID: 15215412
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Spritz: a server for the prediction of intrinsically disordered regions in protein sequences using kernel machines.
    Vullo A; Bortolami O; Pollastri G; Tosatto SC
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W164-8. PubMed ID: 16844983
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A machine learning based method for the prediction of secretory proteins using amino acid composition, their order and similarity-search.
    Garg A; Raghava GP
    In Silico Biol; 2008; 8(2):129-40. PubMed ID: 18928201
    [TBL] [Abstract][Full Text] [Related]  

  • 5. COPid: composition based protein identification.
    Kumar M; Thakur V; Raghava GP
    In Silico Biol; 2008; 8(2):121-8. PubMed ID: 18928200
    [TBL] [Abstract][Full Text] [Related]  

  • 6. PA-GOSUB: a searchable database of model organism protein sequences with their predicted Gene Ontology molecular function and subcellular localization.
    Lu P; Szafron D; Greiner R; Wishart DS; Fyshe A; Pearcy B; Poulin B; Eisner R; Ngo D; Lamb N
    Nucleic Acids Res; 2005 Jan; 33(Database issue):D147-53. PubMed ID: 15608166
    [TBL] [Abstract][Full Text] [Related]  

  • 7. MemType-2L: a web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM.
    Chou KC; Shen HB
    Biochem Biophys Res Commun; 2007 Aug; 360(2):339-45. PubMed ID: 17586467
    [TBL] [Abstract][Full Text] [Related]  

  • 8. OrfPredictor: predicting protein-coding regions in EST-derived sequences.
    Min XJ; Butler G; Storms R; Tsang A
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W677-80. PubMed ID: 15980561
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The PRIDE proteomics identifications database: data submission, query, and dataset comparison.
    Jones P; Côté R
    Methods Mol Biol; 2008; 484():287-303. PubMed ID: 18592187
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PathExpress: a web-based tool to identify relevant pathways in gene expression data.
    Goffard N; Weiller G
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W176-81. PubMed ID: 17586825
    [TBL] [Abstract][Full Text] [Related]  

  • 11. KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns.
    Wong YH; Lee TY; Liang HK; Huang CM; Wang TY; Yang YH; Chu CH; Huang HD; Ko MT; Hwang JK
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W588-94. PubMed ID: 17517770
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Structure SNP (StSNP): a web server for mapping and modeling nsSNPs on protein structures with linkage to metabolic pathways.
    Uzun A; Leslin CM; Abyzov A; Ilyin V
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W384-92. PubMed ID: 17537826
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Predicting homologous signaling pathways using machine learning.
    Bostan B; Greiner R; Szafron D; Lu P
    Bioinformatics; 2009 Nov; 25(22):2913-20. PubMed ID: 19736253
    [TBL] [Abstract][Full Text] [Related]  

  • 14. TMB-Hunt: a web server to screen sequence sets for transmembrane beta-barrel proteins.
    Garrow AG; Agnew A; Westhead DR
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W188-92. PubMed ID: 15980452
    [TBL] [Abstract][Full Text] [Related]  

  • 15. KOBAS server: a web-based platform for automated annotation and pathway identification.
    Wu J; Mao X; Cai T; Luo J; Wei L
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W720-4. PubMed ID: 16845106
    [TBL] [Abstract][Full Text] [Related]  

  • 16. SVM-HUSTLE--an iterative semi-supervised machine learning approach for pairwise protein remote homology detection.
    Shah AR; Oehmen CS; Webb-Robertson BJ
    Bioinformatics; 2008 Mar; 24(6):783-90. PubMed ID: 18245127
    [TBL] [Abstract][Full Text] [Related]  

  • 17. An algorithm for linear metabolic pathway alignment.
    Chen M; Hofestaedt R
    In Silico Biol; 2005; 5(2):111-28. PubMed ID: 15972016
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A Protein Classification Benchmark collection for machine learning.
    Sonego P; Pacurar M; Dhir S; Kertész-Farkas A; Kocsor A; Gáspári Z; Leunissen JA; Pongor S
    Nucleic Acids Res; 2007 Jan; 35(Database issue):D232-6. PubMed ID: 17142240
    [TBL] [Abstract][Full Text] [Related]  

  • 19. DiANNA 1.1: an extension of the DiANNA web server for ternary cysteine classification.
    Ferrè F; Clote P
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W182-5. PubMed ID: 16844987
    [TBL] [Abstract][Full Text] [Related]  

  • 20. pTARGET: a web server for predicting protein subcellular localization.
    Guda C
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W210-3. PubMed ID: 16844995
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.