These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
42. Alternative pathway approach for automating analysis and validation of cell perturbation networks and design of perturbation experiments. Gong Y; Zhang Z Ann N Y Acad Sci; 2007 Dec; 1115():267-85. PubMed ID: 17925355 [TBL] [Abstract][Full Text] [Related]
43. Genome-scale analysis of Saccharomyces cerevisiae metabolism and ethanol production in fed-batch culture. Hjersted JL; Henson MA; Mahadevan R Biotechnol Bioeng; 2007 Aug; 97(5):1190-204. PubMed ID: 17243146 [TBL] [Abstract][Full Text] [Related]
44. Ensemble learning of genetic networks from time-series expression data. Nam D; Yoon SH; Kim JF Bioinformatics; 2007 Dec; 23(23):3225-31. PubMed ID: 17977884 [TBL] [Abstract][Full Text] [Related]
45. Identification of flux regulation coefficients from elementary flux modes: A systems biology tool for analysis of metabolic networks. Nookaew I; Meechai A; Thammarongtham C; Laoteng K; Ruanglek V; Cheevadhanarak S; Nielsen J; Bhumiratana S Biotechnol Bioeng; 2007 Aug; 97(6):1535-49. PubMed ID: 17238207 [TBL] [Abstract][Full Text] [Related]
46. Functional clustering of yeast proteins from the protein-protein interaction network. Sen TZ; Kloczkowski A; Jernigan RL BMC Bioinformatics; 2006 Jul; 7():355. PubMed ID: 16863590 [TBL] [Abstract][Full Text] [Related]
47. The relationship between protein sequences and their gene ontology functions. Duan ZH; Hughes B; Reichel L; Perez DM; Shi T BMC Bioinformatics; 2006 Dec; 7 Suppl 4(Suppl 4):S11. PubMed ID: 17217503 [TBL] [Abstract][Full Text] [Related]
48. Network fingerprint: a knowledge-based characterization of biomedical networks. Cui X; He H; He F; Wang S; Li F; Bo X Sci Rep; 2015 Aug; 5():13286. PubMed ID: 26307246 [TBL] [Abstract][Full Text] [Related]
49. Correlation analysis reveals the emergence of coherence in the gene expression dynamics following system perturbation. Neretti N; Remondini D; Tatar M; Sedivy JM; Pierini M; Mazzatti D; Powell J; Franceschi C; Castellani GC BMC Bioinformatics; 2007 Mar; 8 Suppl 1(Suppl 1):S16. PubMed ID: 17430560 [TBL] [Abstract][Full Text] [Related]
50. Functional topology in a network of protein interactions. Przulj N; Wigle DA; Jurisica I Bioinformatics; 2004 Feb; 20(3):340-8. PubMed ID: 14960460 [TBL] [Abstract][Full Text] [Related]
51. Learning yeast gene functions from heterogeneous sources of data using hybrid weighted Bayesian networks. Deng X; Geng H; Ali H Proc IEEE Comput Syst Bioinform Conf; 2005; ():25-34. PubMed ID: 16447959 [TBL] [Abstract][Full Text] [Related]
52. Boolean dynamics of genetic regulatory networks inferred from microarray time series data. Martin S; Zhang Z; Martino A; Faulon JL Bioinformatics; 2007 Apr; 23(7):866-74. PubMed ID: 17267426 [TBL] [Abstract][Full Text] [Related]
53. Connectivity and expression in protein networks: proteins in a complex are uniformly expressed. Carmi S; Levanon EY; Havlin S; Eisenberg E Phys Rev E Stat Nonlin Soft Matter Phys; 2006 Mar; 73(3 Pt 1):031909. PubMed ID: 16605560 [TBL] [Abstract][Full Text] [Related]
54. Systematic gene function prediction from gene expression data by using a fuzzy nearest-cluster method. Li XL; Tan YC; Ng SK BMC Bioinformatics; 2006 Dec; 7 Suppl 4(Suppl 4):S23. PubMed ID: 17217516 [TBL] [Abstract][Full Text] [Related]
55. State space modeling of yeast gene expression dynamics. Haavisto O; Hyötyniemi H; Roos C J Bioinform Comput Biol; 2007 Feb; 5(1):31-46. PubMed ID: 17477490 [TBL] [Abstract][Full Text] [Related]
56. Efficient detection of network motifs. Wernicke S IEEE/ACM Trans Comput Biol Bioinform; 2006; 3(4):347-59. PubMed ID: 17085844 [TBL] [Abstract][Full Text] [Related]
57. Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection. Tamada Y; Kim S; Bannai H; Imoto S; Tashiro K; Kuhara S; Miyano S Bioinformatics; 2003 Oct; 19 Suppl 2():ii227-36. PubMed ID: 14534194 [TBL] [Abstract][Full Text] [Related]
58. Vertex similarity in networks. Leicht EA; Holme P; Newman ME Phys Rev E Stat Nonlin Soft Matter Phys; 2006 Feb; 73(2 Pt 2):026120. PubMed ID: 16605411 [TBL] [Abstract][Full Text] [Related]
59. Adaptation as a genome-wide autoregulatory principle in the stress response of yeast. De Palo G; Eduati F; Zampieri M; Di Camillo B; Toffolo G; Altafini C IET Syst Biol; 2011 Jul; 5(4):269-79. PubMed ID: 21823758 [TBL] [Abstract][Full Text] [Related]
60. Identifying similar functional modules by a new hybrid spectral clustering method. Madani S; Faez K; Aminghafari M IET Syst Biol; 2012 Oct; 6(5):175-86. PubMed ID: 23101872 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]