BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

894 related articles for article (PubMed ID: 16851315)

  • 21. Performance comparison of generalized born and Poisson methods in the calculation of electrostatic solvation energies for protein structures.
    Feig M; Onufriev A; Lee MS; Im W; Case DA; Brooks CL
    J Comput Chem; 2004 Jan; 25(2):265-84. PubMed ID: 14648625
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Breaking non-native hydrophobic clusters is the rate-limiting step in the folding of an alanine-based peptide.
    Chowdhury S; Zhang W; Wu C; Xiong G; Duan Y
    Biopolymers; 2003 Jan; 68(1):63-75. PubMed ID: 12579580
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Can a continuum solvent model reproduce the free energy landscape of a beta -hairpin folding in water?
    Zhou R; Berne BJ
    Proc Natl Acad Sci U S A; 2002 Oct; 99(20):12777-82. PubMed ID: 12242327
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Accurate and efficient generalized born model based on solvent accessibility: derivation and application for LogP octanol/water prediction and flexible peptide docking.
    Totrov M
    J Comput Chem; 2004 Mar; 25(4):609-19. PubMed ID: 14735578
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Essential dynamics of reversible peptide folding: memory-free conformational dynamics governed by internal hydrogen bonds.
    de Groot BL; Daura X; Mark AE; Grubmüller H
    J Mol Biol; 2001 May; 309(1):299-313. PubMed ID: 11491298
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Refinement of NMR structures using implicit solvent and advanced sampling techniques.
    Chen J; Im W; Brooks CL
    J Am Chem Soc; 2004 Dec; 126(49):16038-47. PubMed ID: 15584737
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Distinguishing native conformations of proteins from decoys with an effective free energy estimator based on the OPLS all-atom force field and the Surface Generalized Born solvent model.
    Felts AK; Gallicchio E; Wallqvist A; Levy RM
    Proteins; 2002 Aug; 48(2):404-22. PubMed ID: 12112706
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Loop propensity of the sequence YKGQP from staphylococcal nuclease: implications for the folding of nuclease.
    Patel S; Sasidhar YU
    J Pept Sci; 2007 Oct; 13(10):679-92. PubMed ID: 17787022
    [TBL] [Abstract][Full Text] [Related]  

  • 29. The sequence TGAAKAVALVL from glyceraldehyde-3-phosphate dehydrogenase displays structural ambivalence and interconverts between alpha-helical and beta-hairpin conformations mediated by collapsed conformational states.
    Patel S; Balaji PV; Sasidhar YU
    J Pept Sci; 2007 May; 13(5):314-26. PubMed ID: 17437248
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Automatic protein design with all atom force-fields by exact and heuristic optimization.
    Wernisch L; Hery S; Wodak SJ
    J Mol Biol; 2000 Aug; 301(3):713-36. PubMed ID: 10966779
    [TBL] [Abstract][Full Text] [Related]  

  • 31. A molecular dynamics study of the correlations between solvent-accessible surface, molecular volume, and folding state.
    Floriano WB; Domont GB; Nascimento MA
    J Phys Chem B; 2007 Feb; 111(7):1893-9. PubMed ID: 17261064
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Effective Born radii in the generalized Born approximation: the importance of being perfect.
    Onufriev A; Case DA; Bashford D
    J Comput Chem; 2002 Nov; 23(14):1297-304. PubMed ID: 12214312
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Cooperative folding mechanism of a beta-hairpin peptide studied by a multicanonical replica-exchange molecular dynamics simulation.
    Yoda T; Sugita Y; Okamoto Y
    Proteins; 2007 Mar; 66(4):846-59. PubMed ID: 17173285
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Helix nucleation kinetics from molecular simulations in explicit solvent.
    Hummer G; García AE; Garde S
    Proteins; 2001 Jan; 42(1):77-84. PubMed ID: 11093262
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Folding of the GB1 hairpin peptide from discrete path sampling.
    Evans DA; Wales DJ
    J Chem Phys; 2004 Jul; 121(2):1080-90. PubMed ID: 15260643
    [TBL] [Abstract][Full Text] [Related]  

  • 36. CHARMM fluctuating charge force field for proteins: II protein/solvent properties from molecular dynamics simulations using a nonadditive electrostatic model.
    Patel S; Mackerell AD; Brooks CL
    J Comput Chem; 2004 Sep; 25(12):1504-14. PubMed ID: 15224394
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Ab initio folding of helix bundle proteins using molecular dynamics simulations.
    Jang S; Kim E; Shin S; Pak Y
    J Am Chem Soc; 2003 Dec; 125(48):14841-6. PubMed ID: 14640661
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Protein refolding versus aggregation: computer simulations on an intermediate-resolution protein model.
    Smith AV; Hall CK
    J Mol Biol; 2001 Sep; 312(1):187-202. PubMed ID: 11545596
    [TBL] [Abstract][Full Text] [Related]  

  • 39. The influence of different treatments of electrostatic interactions on the thermodynamics of folding of peptides.
    Baumketner A; Shea JE
    J Phys Chem B; 2005 Nov; 109(45):21322-8. PubMed ID: 16853765
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Prediction of protein loop conformations using multiscale modeling methods with physical energy scoring functions.
    Olson MA; Feig M; Brooks CL
    J Comput Chem; 2008 Apr; 29(5):820-31. PubMed ID: 17876760
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 45.