271 related articles for article (PubMed ID: 16853446)
1. Are solvation free energies of homogeneous helical peptides additive?
Staritzbichler R; Gu W; Helms V
J Phys Chem B; 2005 Oct; 109(40):19000-7. PubMed ID: 16853446
[TBL] [Abstract][Full Text] [Related]
2. Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteins.
Avbelj F
J Mol Biol; 2000 Jul; 300(5):1335-59. PubMed ID: 10903873
[TBL] [Abstract][Full Text] [Related]
3. Calculation of the free energy of solvation for neutral analogs of amino acid side chains.
Villa A; Mark AE
J Comput Chem; 2002 Apr; 23(5):548-53. PubMed ID: 11948581
[TBL] [Abstract][Full Text] [Related]
4. Exhaustive mutagenesis in silico: multicoordinate free energy calculations on proteins and peptides.
Pitera JW; Kollman PA
Proteins; 2000 Nov; 41(3):385-97. PubMed ID: 11025549
[TBL] [Abstract][Full Text] [Related]
5. Hydration free energies of amino acids: why side chain analog data are not enough.
König G; Boresch S
J Phys Chem B; 2009 Jul; 113(26):8967-74. PubMed ID: 19507836
[TBL] [Abstract][Full Text] [Related]
6. Solvation energies of amino acid side chains and backbone in a family of host-guest pentapeptides.
Wimley WC; Creamer TP; White SH
Biochemistry; 1996 Apr; 35(16):5109-24. PubMed ID: 8611495
[TBL] [Abstract][Full Text] [Related]
7. FACTS: Fast analytical continuum treatment of solvation.
Haberthür U; Caflisch A
J Comput Chem; 2008 Apr; 29(5):701-15. PubMed ID: 17918282
[TBL] [Abstract][Full Text] [Related]
8. Solvation model based on order parameters and a fast sampling method for the calculation of the solvation free energies of peptides.
Gu C; Lustig S; Trout BL
J Phys Chem B; 2006 Jan; 110(3):1476-84. PubMed ID: 16471699
[TBL] [Abstract][Full Text] [Related]
9. Structural characterization of alpha-helices of implicitly solvated poly-alanine.
Couch VA; Cheng N; Nambiar K; Fink W
J Phys Chem B; 2006 Feb; 110(7):3410-9. PubMed ID: 16494355
[TBL] [Abstract][Full Text] [Related]
10. A solvent model for simulations of peptides in bilayers. I. Membrane-promoting alpha-helix formation.
Efremov RG; Nolde DE; Vergoten G; Arseniev AS
Biophys J; 1999 May; 76(5):2448-59. PubMed ID: 10233062
[TBL] [Abstract][Full Text] [Related]
11. Thermodynamic model of secondary structure for alpha-helical peptides and proteins.
Lomize AL; Mosberg HI
Biopolymers; 1997 Aug; 42(2):239-69. PubMed ID: 9235002
[TBL] [Abstract][Full Text] [Related]
12. Application of the frozen atom approximation to the GB/SA continuum model for solvation free energy.
Guvench O; Weiser J; Shenkin P; Kolossváry I; Still WC
J Comput Chem; 2002 Jan; 23(2):214-21. PubMed ID: 11924735
[TBL] [Abstract][Full Text] [Related]
13. Position-resolved free energy of solvation for amino acids in lipid membranes from molecular dynamics simulations.
Johansson AC; Lindahl E
Proteins; 2008 Mar; 70(4):1332-44. PubMed ID: 17876818
[TBL] [Abstract][Full Text] [Related]
14. Adhesion of protein residues to substituted (111) diamond surfaces: an insight from density functional theory and classical molecular dynamics simulations.
Borisenko KB; Reavy HJ; Zhao Q; Abel EW
J Biomed Mater Res A; 2008 Sep; 86(4):1113-21. PubMed ID: 18080307
[TBL] [Abstract][Full Text] [Related]
15. Molecular dynamics simulation of folding of a short helical peptide with many charged residues.
Wei CC; Ho MH; Wang WH; Sun YC
J Phys Chem B; 2005 Oct; 109(42):19980-6. PubMed ID: 16853583
[TBL] [Abstract][Full Text] [Related]
16. Force field evaluation for biomolecular simulation: free enthalpies of solvation of polar and apolar compounds in various solvents.
Geerke DP; van Gunsteren WF
Chemphyschem; 2006 Mar; 7(3):671-8. PubMed ID: 16514695
[TBL] [Abstract][Full Text] [Related]
17. Binding of antifusion peptides with HIVgp41 from molecular dynamics simulations: quantitative correlation with experiment.
Strockbine B; Rizzo RC
Proteins; 2007 May; 67(3):630-42. PubMed ID: 17335007
[TBL] [Abstract][Full Text] [Related]
18. Membrane adsorption, folding, insertion and translocation of synthetic trans-membrane peptides.
Ulmschneider MB; Ulmschneider JP
Mol Membr Biol; 2008 Apr; 25(3):245-57. PubMed ID: 18428040
[TBL] [Abstract][Full Text] [Related]
19. Electrostatic solvation free energy of amino acid side chain analogs: implications for the validity of electrostatic linear response in water.
Lin B; Pettitt BM
J Comput Chem; 2011 Apr; 32(5):878-85. PubMed ID: 20941733
[TBL] [Abstract][Full Text] [Related]
20. Conformational preferences of a short Aib/Ala-based water-soluble peptide as a function of temperature.
Banerjee R; Chattopadhyay S; Basu G
Proteins; 2009 Jul; 76(1):184-200. PubMed ID: 19137603
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
