BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

272 related articles for article (PubMed ID: 16853446)

  • 21. Solvation free energy of amino acids and side-chain analogues.
    Chang J; Lenhoff AM; Sandler SI
    J Phys Chem B; 2007 Mar; 111(8):2098-106. PubMed ID: 17269814
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Polyproline II helix is the preferred conformation for unfolded polyalanine in water.
    Mezei M; Fleming PJ; Srinivasan R; Rose GD
    Proteins; 2004 May; 55(3):502-7. PubMed ID: 15103614
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Sensitivity of polar solvation dynamics to the secondary structures of aqueous proteins and the role of surface exposure of the probe.
    Bandyopadhyay S; Chakraborty S; Balasubramanian S; Bagchi B
    J Am Chem Soc; 2005 Mar; 127(11):4071-5. PubMed ID: 15771544
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Conformational studies on model peptides with 1-aminocyclobutane 1-carboxylic acid residues.
    Balaji VN; Ramnarayan K; Chan MF; Rao SN
    Pept Res; 1995; 8(3):178-86. PubMed ID: 7670233
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Translocation of amino acyl residues from the membrane interface to the hydrophobic core: thermodynamic model and experimental analysis using ATR-FTIR spectroscopy.
    Aisenbrey C; Goormaghtigh E; Ruysschaert JM; Bechinger B
    Mol Membr Biol; 2006; 23(4):363-74. PubMed ID: 16923729
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Surface-integral QSPR models: local energy properties.
    Ehresmann B; de Groot MJ; Clark T
    J Chem Inf Model; 2005; 45(4):1053-60. PubMed ID: 16045301
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Conformational studies on model peptides with 1-aminocyclopropane 1-carboxylic acid residues.
    Balaji VN; Ramnarayan K; Chan MF; Rao SN
    Pept Res; 1994; 7(2):60-71. PubMed ID: 8012122
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Conformation, dynamics, solvation and relative stabilities of selected beta-hexopyranoses in water: a molecular dynamics study with the GROMOS 45A4 force field.
    Kräutler V; Müller M; Hünenberger PH
    Carbohydr Res; 2007 Oct; 342(14):2097-124. PubMed ID: 17573054
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Direct folding simulation of alpha-helices and beta-hairpins based on a single all-atom force field with an implicit solvation model.
    Jang S; Kim E; Pak Y
    Proteins; 2007 Jan; 66(1):53-60. PubMed ID: 17063490
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Infrared and vibrational CD spectra of partially solvated alpha-helices: DFT-based simulations with explicit solvent.
    Turner DR; Kubelka J
    J Phys Chem B; 2007 Feb; 111(7):1834-45. PubMed ID: 17256894
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Linear response theory: an alternative to PB and GB methods for the analysis of molecular dynamics trajectories?
    Morreale A; de la Cruz X; Meyer T; Gelpí JL; Luque FJ; Orozco M
    Proteins; 2004 Nov; 57(3):458-67. PubMed ID: 15382247
    [TBL] [Abstract][Full Text] [Related]  

  • 32. In silico prediction of drug solubility. 3. Free energy of solvation in pure amorphous matter.
    Lüder K; Lindfors L; Westergren J; Nordholm S; Kjellander R
    J Phys Chem B; 2007 Jun; 111(25):7303-11. PubMed ID: 17550285
    [TBL] [Abstract][Full Text] [Related]  

  • 33. The effect of aqueous solvation upon alpha-helix formation for polyalanines.
    Salvador P; Asensio A; Dannenberg JJ
    J Phys Chem B; 2007 Jun; 111(25):7462-6. PubMed ID: 17552560
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Comparison of two simulation methods to compute solvation free energies and partition coefficients.
    Yang L; Ahmed A; Sandler SI
    J Comput Chem; 2013 Feb; 34(4):284-93. PubMed ID: 23109246
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Conformational equilibrium in alanine-rich peptides probed by reversible stretching simulations.
    Hénin J; Schulten K; Chipot C
    J Phys Chem B; 2006 Aug; 110(33):16718-23. PubMed ID: 16913811
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Establishing effective simulation protocols for beta- and alpha/beta-peptides. II. Molecular mechanical (MM) model for a cyclic beta-residue.
    Zhu X; Koenig P; Gellman SH; Yethiraj A; Cui Q
    J Phys Chem B; 2008 May; 112(17):5439-48. PubMed ID: 18402479
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Hydrogen-bond cooperativity, vibrational coupling, and dependence of helix stability on changes in amino acid sequence in small 3 10-helical peptides. A density functional theory study.
    Wieczorek R; Dannenberg JJ
    J Am Chem Soc; 2003 Nov; 125(46):14065-71. PubMed ID: 14611243
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Absolute free energies of binding of peptide analogs to the HIV-1 protease from molecular dynamics simulations.
    Bartels C; Widmer A; Ehrhardt C
    J Comput Chem; 2005 Sep; 26(12):1294-305. PubMed ID: 15981257
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Molecular modeling of conformational properties of oligodepsipeptides.
    Zhang J; King M; Suggs L; Ren P
    Biomacromolecules; 2007 Oct; 8(10):3015-24. PubMed ID: 17877396
    [TBL] [Abstract][Full Text] [Related]  

  • 40. An application of coupled reference interaction site model/molecular dynamics to the conformational analysis of the alanine dipeptide.
    Freedman H; Truong TN
    J Chem Phys; 2004 Dec; 121(24):12447-56. PubMed ID: 15606265
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 14.