These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

184 related articles for article (PubMed ID: 16854159)

  • 1. Importance of the single amino acid potential in water for secondary and tertiary structures of proteins.
    Iwaoka M; Yosida D; Kimura N
    J Phys Chem B; 2006 Jul; 110(29):14475-82. PubMed ID: 16854159
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The SAAP force field. A simple approach to a new all-atom protein force field by using single amino acid potential (SAAP) functions in various solvents.
    Iwaoka M; Tomoda S
    J Comput Chem; 2003 Jul; 24(10):1192-200. PubMed ID: 12820126
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The SAAP force field: development of the single amino acid potentials for 20 proteinogenic amino acids and Monte Carlo molecular simulation for short peptides.
    Iwaoka M; Kimura N; Yosida D; Minezaki T
    J Comput Chem; 2009 Oct; 30(13):2039-55. PubMed ID: 19140140
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteins.
    Avbelj F
    J Mol Biol; 2000 Jul; 300(5):1335-59. PubMed ID: 10903873
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Single-site mutation and secondary structure stability: an isodesmic reaction approach. The case of unnatural amino acid mutagenesis Ala-->Lac.
    Cieplak AS; Sürmeli NB
    J Org Chem; 2004 May; 69(10):3250-61. PubMed ID: 15132529
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Statistical and molecular dynamics studies of buried waters in globular proteins.
    Park S; Saven JG
    Proteins; 2005 Aug; 60(3):450-63. PubMed ID: 15937899
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Free energies of amino acid side-chain rotamers in alpha-helices, beta-sheets and alpha-helix N-caps.
    Stapley BJ; Doig AJ
    J Mol Biol; 1997 Sep; 272(3):456-64. PubMed ID: 9325103
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Influence of side chain conformations on local conformational features of amino acids and implication for force field development.
    Jiang F; Han W; Wu YD
    J Phys Chem B; 2010 May; 114(17):5840-50. PubMed ID: 20392111
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Polypeptide folding using Monte Carlo sampling, concerted rotation, and continuum solvation.
    Ulmschneider JP; Jorgensen WL
    J Am Chem Soc; 2004 Feb; 126(6):1849-57. PubMed ID: 14871118
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Comparison between the phi distribution of the amino acids in the protein database and NMR data indicates that amino acids have various phi propensities in the random coil conformation.
    Serrano L
    J Mol Biol; 1995 Nov; 254(2):322-33. PubMed ID: 7490751
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The world of beta- and gamma-peptides comprised of homologated proteinogenic amino acids and other components.
    Seebach D; Beck AK; Bierbaum DJ
    Chem Biodivers; 2004 Aug; 1(8):1111-239. PubMed ID: 17191902
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Properties of polyproline II, a secondary structure element implicated in protein-protein interactions.
    Cubellis MV; Caillez F; Blundell TL; Lovell SC
    Proteins; 2005 Mar; 58(4):880-92. PubMed ID: 15657931
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Peptide models XLV: conformational properties of N-formyl-L-methioninamide and its relevance to methionine in proteins.
    Láng A; Csizmadia IG; Perczel A
    Proteins; 2005 Feb; 58(3):571-88. PubMed ID: 15616985
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Modeling of folding and unfolding mechanisms in alanine-based alpha-helical polypeptides.
    Morozov AN; Lin SH
    J Phys Chem B; 2006 Oct; 110(41):20555-61. PubMed ID: 17034243
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Protein design with L- and D-alpha-amino acid structures as the alphabet.
    Durani S
    Acc Chem Res; 2008 Oct; 41(10):1301-8. PubMed ID: 18642934
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Helix-forming tendencies of nonpolar amino acids predicted by Monte Carlo simulated annealing.
    Okamoto Y
    Proteins; 1994 May; 19(1):14-23. PubMed ID: 8066082
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Conformational preferences of a short Aib/Ala-based water-soluble peptide as a function of temperature.
    Banerjee R; Chattopadhyay S; Basu G
    Proteins; 2009 Jul; 76(1):184-200. PubMed ID: 19137603
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Unique side chain conformation of a Leu residue in a triple-helical structure.
    Okuyama K; Narita H; Kawaguchi T; Noguchi K; Tanaka Y; Nishino N
    Biopolymers; 2007 Jun; 86(3):212-21. PubMed ID: 17373653
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Intrinsically stable secondary structure elements of proteins: a comprehensive study of folding units of proteins by computation and by analysis of data determined by X-ray crystallography.
    Perczel A; Jákli I; Csizmadia IG
    Chemistry; 2003 Nov; 9(21):5332-42. PubMed ID: 14613143
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Ab initio protein structure prediction with force field parameters derived from water-phase quantum chemical calculation.
    Katagiri D; Fuji H; Neya S; Hoshino T
    J Comput Chem; 2008 Sep; 29(12):1930-44. PubMed ID: 18366016
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.