These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
2. A thermodynamic study of unusually stable RNA and DNA hairpins. Antao VP; Lai SY; Tinoco I Nucleic Acids Res; 1991 Nov; 19(21):5901-5. PubMed ID: 1719483 [TBL] [Abstract][Full Text] [Related]
3. Effect of loop composition on the stability and folding kinetics of RNA hairpins with large loops. Melnykov AV; Nayak RK; Hall KB; Van Orden A Biochemistry; 2015 Mar; 54(10):1886-96. PubMed ID: 25697574 [TBL] [Abstract][Full Text] [Related]
4. RNA simulations: probing hairpin unfolding and the dynamics of a GNRA tetraloop. Sorin EJ; Engelhardt MA; Herschlag D; Pande VS J Mol Biol; 2002 Apr; 317(4):493-506. PubMed ID: 11955005 [TBL] [Abstract][Full Text] [Related]
5. Exploring the complex folding kinetics of RNA hairpins: II. Effect of sequence, length, and misfolded states. Zhang W; Chen SJ Biophys J; 2006 Feb; 90(3):778-87. PubMed ID: 16272439 [TBL] [Abstract][Full Text] [Related]
6. Free energy profile of RNA hairpins: a molecular dynamics simulation study. Deng NJ; Cieplak P Biophys J; 2010 Feb; 98(4):627-36. PubMed ID: 20159159 [TBL] [Abstract][Full Text] [Related]
7. Structures, kinetics, thermodynamics, and biological functions of RNA hairpins. Bevilacqua PC; Blose JM Annu Rev Phys Chem; 2008; 59():79-103. PubMed ID: 17937599 [TBL] [Abstract][Full Text] [Related]
8. Exploring the complex folding kinetics of RNA hairpins: I. General folding kinetics analysis. Zhang W; Chen SJ Biophys J; 2006 Feb; 90(3):765-77. PubMed ID: 16272440 [TBL] [Abstract][Full Text] [Related]
9. A test of the model to predict unusually stable RNA hairpin loop stability. Dale T; Smith R; Serra MJ RNA; 2000 Apr; 6(4):608-15. PubMed ID: 10786851 [TBL] [Abstract][Full Text] [Related]
10. Folding of a DNA hairpin loop structure in explicit solvent using replica-exchange molecular dynamics simulations. Kannan S; Zacharias M Biophys J; 2007 Nov; 93(9):3218-28. PubMed ID: 17660316 [TBL] [Abstract][Full Text] [Related]
16. Melting studies of short DNA hairpins: influence of loop sequence and adjoining base pair identity on hairpin thermodynamic stability. Vallone PM; Paner TM; Hilario J; Lane MJ; Faldasz BD; Benight AS Biopolymers; 1999 Oct; 50(4):425-42. PubMed ID: 10423551 [TBL] [Abstract][Full Text] [Related]
17. Remarkable morphological variability of a common RNA folding motif: the GNRA tetraloop-receptor interaction. Abramovitz DL; Pyle AM J Mol Biol; 1997 Feb; 266(3):493-506. PubMed ID: 9067606 [TBL] [Abstract][Full Text] [Related]
18. Evidence that folding of an RNA tetraloop hairpin is less cooperative than its DNA counterpart. Moody EM; Feerrar JC; Bevilacqua PC Biochemistry; 2004 Jun; 43(25):7992-8. PubMed ID: 15209494 [TBL] [Abstract][Full Text] [Related]
19. On loop folding in nucleic acid hairpin-type structures. Haasnoot CA; Hilbers CW; van der Marel GA; van Boom JH; Singh UC; Pattabiraman N; Kollman PA J Biomol Struct Dyn; 1986 Apr; 3(5):843-57. PubMed ID: 2482747 [TBL] [Abstract][Full Text] [Related]
20. A new computational approach for mechanical folding kinetics of RNA hairpins. Cao S; Chen SJ Biophys J; 2009 May; 96(10):4024-34. PubMed ID: 19450474 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]