These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
5. Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score. Pandit SB; Skolnick J BMC Bioinformatics; 2008 Dec; 9():531. PubMed ID: 19077267 [TBL] [Abstract][Full Text] [Related]
6. Structure-dependent sequence alignment for remotely related proteins. Yang AS Bioinformatics; 2002 Dec; 18(12):1658-65. PubMed ID: 12490451 [TBL] [Abstract][Full Text] [Related]
7. An iterative self-refining and self-evaluating approach for protein model quality estimation. Wang Z; Cheng J Protein Sci; 2012 Jan; 21(1):142-51. PubMed ID: 22057943 [TBL] [Abstract][Full Text] [Related]
8. Improved scoring function for comparative modeling using the M4T method. Rykunov D; Steinberger E; Madrid-Aliste CJ; Fiser A J Struct Funct Genomics; 2009 Mar; 10(1):95-9. PubMed ID: 18985440 [TBL] [Abstract][Full Text] [Related]
9. Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction. Scheeff ED; Bourne PE BMC Bioinformatics; 2006 Sep; 7():410. PubMed ID: 16970830 [TBL] [Abstract][Full Text] [Related]
11. Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models? Taly JF; Marin A; Gibrat JF BMC Bioinformatics; 2008 Jan; 9():6. PubMed ID: 18179702 [TBL] [Abstract][Full Text] [Related]
12. Predicting and improving the protein sequence alignment quality by support vector regression. Lee M; Jeong CS; Kim D BMC Bioinformatics; 2007 Dec; 8():471. PubMed ID: 18053160 [TBL] [Abstract][Full Text] [Related]
13. High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABER-TOOTH. Teichert F; Minning J; Bastolla U; Porto M BMC Bioinformatics; 2010 May; 11():251. PubMed ID: 20470364 [TBL] [Abstract][Full Text] [Related]
14. Template-based protein structure prediction in CASP11 and retrospect of I-TASSER in the last decade. Yang J; Zhang W; He B; Walker SE; Zhang H; Govindarajoo B; Virtanen J; Xue Z; Shen HB; Zhang Y Proteins; 2016 Sep; 84 Suppl 1(Suppl 1):233-46. PubMed ID: 26343917 [TBL] [Abstract][Full Text] [Related]
16. Template-based and free modeling by RAPTOR++ in CASP8. Xu J; Peng J; Zhao F Proteins; 2009; 77 Suppl 9(Suppl 9):133-7. PubMed ID: 19722267 [TBL] [Abstract][Full Text] [Related]
17. Multiple mapping method: a novel approach to the sequence-to-structure alignment problem in comparative protein structure modeling. Rai BK; Fiser A Proteins; 2006 May; 63(3):644-61. PubMed ID: 16437570 [TBL] [Abstract][Full Text] [Related]
18. Refining homology models by combining replica-exchange molecular dynamics and statistical potentials. Zhu J; Fan H; Periole X; Honig B; Mark AE Proteins; 2008 Sep; 72(4):1171-88. PubMed ID: 18338384 [TBL] [Abstract][Full Text] [Related]
19. Benchmarking template selection and model quality assessment for high-resolution comparative modeling. Sadowski MI; Jones DT Proteins; 2007 Nov; 69(3):476-85. PubMed ID: 17623860 [TBL] [Abstract][Full Text] [Related]
20. MUFOLD: A new solution for protein 3D structure prediction. Zhang J; Wang Q; Barz B; He Z; Kosztin I; Shang Y; Xu D Proteins; 2010 Apr; 78(5):1137-52. PubMed ID: 19927325 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]