332 related articles for article (PubMed ID: 16873463)
21. MSSimulator: Simulation of mass spectrometry data.
Bielow C; Aiche S; Andreotti S; Reinert K
J Proteome Res; 2011 Jul; 10(7):2922-9. PubMed ID: 21526843
[TBL] [Abstract][Full Text] [Related]
22. Latest developments in sample treatment for 18O-isotopic labeling for proteomics mass spectrometry-based approaches: a critical review.
Capelo JL; Carreira RJ; Fernandes L; Lodeiro C; Santos HM; Simal-Gandara J
Talanta; 2010 Feb; 80(4):1476-86. PubMed ID: 20082805
[TBL] [Abstract][Full Text] [Related]
23. Dimethyl multiplexed labeling combined with microcolumn separation and MS analysis for time course study in proteomics.
Hsu JL; Huang SY; Chen SH
Electrophoresis; 2006 Sep; 27(18):3652-60. PubMed ID: 16927424
[TBL] [Abstract][Full Text] [Related]
24. VIPER: an advanced software package to support high-throughput LC-MS peptide identification.
Monroe ME; Tolić N; Jaitly N; Shaw JL; Adkins JN; Smith RD
Bioinformatics; 2007 Aug; 23(15):2021-3. PubMed ID: 17545182
[TBL] [Abstract][Full Text] [Related]
25. Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements.
Lange E; Tautenhahn R; Neumann S; Gröpl C
BMC Bioinformatics; 2008 Sep; 9():375. PubMed ID: 18793413
[TBL] [Abstract][Full Text] [Related]
26. Quantitative proteome mapping of nitrotyrosines.
Bigelow DJ; Qian WJ
Methods Enzymol; 2008; 440():191-205. PubMed ID: 18423218
[TBL] [Abstract][Full Text] [Related]
27. Algorithms for alignment of mass spectrometry proteomic data.
Jeffries N
Bioinformatics; 2005 Jul; 21(14):3066-73. PubMed ID: 15879456
[TBL] [Abstract][Full Text] [Related]
28. A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics.
Webb-Robertson BJ; Cannon WR; Oehmen CS; Shah AR; Gurumoorthi V; Lipton MS; Waters KM
Bioinformatics; 2008 Jul; 24(13):1503-9. PubMed ID: 18453551
[TBL] [Abstract][Full Text] [Related]
29. Assessing biological variation and protein processing in primary human leukocytes by automated multiplex stable isotope labeling coupled to 2 dimensional peptide separation.
Raijmakers R; Heck AJ; Mohammed S
Mol Biosyst; 2009 Sep; 5(9):992-1003. PubMed ID: 19668865
[TBL] [Abstract][Full Text] [Related]
30. Design and analysis of quantitative differential proteomics investigations using LC-MS technology.
Bukhman YV; Dharsee M; Ewing R; Chu P; Topaloglou T; Le Bihan T; Goh T; Duewel H; Stewart II; Wisniewski JR; Ng NF
J Bioinform Comput Biol; 2008 Feb; 6(1):107-23. PubMed ID: 18324749
[TBL] [Abstract][Full Text] [Related]
31. SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling.
Mueller LN; Rinner O; Schmidt A; Letarte S; Bodenmiller B; Brusniak MY; Vitek O; Aebersold R; Müller M
Proteomics; 2007 Oct; 7(19):3470-80. PubMed ID: 17726677
[TBL] [Abstract][Full Text] [Related]
32. Highly accelerated feature detection in proteomics data sets using modern graphics processing units.
Hussong R; Gregorius B; Tholey A; Hildebrandt A
Bioinformatics; 2009 Aug; 25(15):1937-43. PubMed ID: 19447788
[TBL] [Abstract][Full Text] [Related]
33. New approach for rapid detection of known hemoglobin variants using LC-MS/MS combined with a peptide database.
Basilico F; Di Silvestre D; Sedini S; Petretto A; Levreri I; Melioli G; Farina C; Mori F; Mauri PL
J Mass Spectrom; 2007 Mar; 42(3):288-92. PubMed ID: 17177235
[TBL] [Abstract][Full Text] [Related]
34. Reproducibility assessment of relative quantitation strategies for LC-MS based proteomics.
Kim YJ; Zhan P; Feild B; Ruben SM; He T
Anal Chem; 2007 Aug; 79(15):5651-8. PubMed ID: 17580949
[TBL] [Abstract][Full Text] [Related]
35. SVM-HUSTLE--an iterative semi-supervised machine learning approach for pairwise protein remote homology detection.
Shah AR; Oehmen CS; Webb-Robertson BJ
Bioinformatics; 2008 Mar; 24(6):783-90. PubMed ID: 18245127
[TBL] [Abstract][Full Text] [Related]
36. Robust algorithm for alignment of liquid chromatography-mass spectrometry analyses in an accurate mass and time tag data analysis pipeline.
Jaitly N; Monroe ME; Petyuk VA; Clauss TR; Adkins JN; Smith RD
Anal Chem; 2006 Nov; 78(21):7397-409. PubMed ID: 17073405
[TBL] [Abstract][Full Text] [Related]
37. MapQuant: open-source software for large-scale protein quantification.
Leptos KC; Sarracino DA; Jaffe JD; Krastins B; Church GM
Proteomics; 2006 Mar; 6(6):1770-82. PubMed ID: 16470651
[TBL] [Abstract][Full Text] [Related]
38. Label-free comparative analysis of proteomics mixtures using chromatographic alignment of high-resolution muLC-MS data.
Finney GL; Blackler AR; Hoopmann MR; Canterbury JD; Wu CC; MacCoss MJ
Anal Chem; 2008 Feb; 80(4):961-71. PubMed ID: 18189369
[TBL] [Abstract][Full Text] [Related]
39. Classification of peptide mass fingerprint data by novel no-regret boosting method.
Gambin A; Szczurek E; Dutkowski J; Bakun M; Dadlez M
Comput Biol Med; 2009 May; 39(5):460-73. PubMed ID: 19386298
[TBL] [Abstract][Full Text] [Related]
40. JVirGel 2.0: computational prediction of proteomes separated via two-dimensional gel electrophoresis under consideration of membrane and secreted proteins.
Hiller K; Grote A; Maneck M; Münch R; Jahn D
Bioinformatics; 2006 Oct; 22(19):2441-3. PubMed ID: 16870933
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
