BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

190 related articles for article (PubMed ID: 16873468)

  • 1. Context-specific independence mixture modeling for positional weight matrices.
    Georgi B; Schliep A
    Bioinformatics; 2006 Jul; 22(14):e166-73. PubMed ID: 16873468
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Functional inference from non-random distributions of conserved predicted transcription factor binding sites.
    Dieterich C; Rahmann S; Vingron M
    Bioinformatics; 2004 Aug; 20 Suppl 1():i109-15. PubMed ID: 15262788
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Natural similarity measures between position frequency matrices with an application to clustering.
    Pape UJ; Rahmann S; Vingron M
    Bioinformatics; 2008 Feb; 24(3):350-7. PubMed ID: 18174183
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Enhanced position weight matrices using mixture models.
    Hannenhalli S; Wang LS
    Bioinformatics; 2005 Jun; 21 Suppl 1():i204-12. PubMed ID: 15961459
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Informative priors based on transcription factor structural class improve de novo motif discovery.
    Narlikar L; Gordân R; Ohler U; Hartemink AJ
    Bioinformatics; 2006 Jul; 22(14):e384-92. PubMed ID: 16873497
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Position dependencies in transcription factor binding sites.
    Tomovic A; Oakeley EJ
    Bioinformatics; 2007 Apr; 23(8):933-41. PubMed ID: 17308339
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha.
    Li L; Cheng AS; Jin VX; Paik HH; Fan M; Li X; Zhang W; Robarge J; Balch C; Davuluri RV; Kim S; Huang TH; Nephew KP
    Bioinformatics; 2006 Sep; 22(18):2210-6. PubMed ID: 16809387
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Predicting transcription factor affinities to DNA from a biophysical model.
    Roider HG; Kanhere A; Manke T; Vingron M
    Bioinformatics; 2007 Jan; 23(2):134-41. PubMed ID: 17098775
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MotifCut: regulatory motifs finding with maximum density subgraphs.
    Fratkin E; Naughton BT; Brutlag DL; Batzoglou S
    Bioinformatics; 2006 Jul; 22(14):e150-7. PubMed ID: 16873465
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Improvement of TRANSFAC matrices using multiple local alignment of transcription factor binding site sequences.
    Fu Y; Weng Z
    Genome Inform; 2005; 16(1):68-72. PubMed ID: 16362908
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Finding motifs from all sequences with and without binding sites.
    Leung HC; Chin FY
    Bioinformatics; 2006 Sep; 22(18):2217-23. PubMed ID: 16870937
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Fast model-based protein homology detection without alignment.
    Hochreiter S; Heusel M; Obermayer K
    Bioinformatics; 2007 Jul; 23(14):1728-36. PubMed ID: 17488755
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Simultaneous alignment and annotation of cis-regulatory regions.
    Bais AS; Grossmann S; Vingron M
    Bioinformatics; 2007 Jan; 23(2):e44-9. PubMed ID: 17237103
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Predicting transcription factor binding sites using local over-representation and comparative genomics.
    Defrance M; Touzet H
    BMC Bioinformatics; 2006 Aug; 7():396. PubMed ID: 16945132
    [TBL] [Abstract][Full Text] [Related]  

  • 15. On counting position weight matrix matches in a sequence, with application to discriminative motif finding.
    Sinha S
    Bioinformatics; 2006 Jul; 22(14):e454-63. PubMed ID: 16873507
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A profile-based deterministic sequential Monte Carlo algorithm for motif discovery.
    Liang KC; Wang X; Anastassiou D
    Bioinformatics; 2008 Jan; 24(1):46-55. PubMed ID: 18024972
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MUSA: a parameter free algorithm for the identification of biologically significant motifs.
    Mendes ND; Casimiro AC; Santos PM; Sá-Correia I; Oliveira AL; Freitas AT
    Bioinformatics; 2006 Dec; 22(24):2996-3002. PubMed ID: 17068086
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Modeling promoter grammars with evolving hidden Markov models.
    Won KJ; Sandelin A; Marstrand TT; Krogh A
    Bioinformatics; 2008 Aug; 24(15):1669-75. PubMed ID: 18535083
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Efficient identification of DNA hybridization partners in a sequence database.
    Mann TP; Noble WS
    Bioinformatics; 2006 Jul; 22(14):e350-8. PubMed ID: 16873493
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A new approach to the assessment of the quality of predictions of transcription factor binding sites.
    Nowakowski S; Tiuryn J
    J Biomed Inform; 2007 Apr; 40(2):139-49. PubMed ID: 16949346
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.