BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

498 related articles for article (PubMed ID: 16873507)

  • 1. On counting position weight matrix matches in a sequence, with application to discriminative motif finding.
    Sinha S
    Bioinformatics; 2006 Jul; 22(14):e454-63. PubMed ID: 16873507
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MotifCut: regulatory motifs finding with maximum density subgraphs.
    Fratkin E; Naughton BT; Brutlag DL; Batzoglou S
    Bioinformatics; 2006 Jul; 22(14):e150-7. PubMed ID: 16873465
    [TBL] [Abstract][Full Text] [Related]  

  • 3. MUSA: a parameter free algorithm for the identification of biologically significant motifs.
    Mendes ND; Casimiro AC; Santos PM; Sá-Correia I; Oliveira AL; Freitas AT
    Bioinformatics; 2006 Dec; 22(24):2996-3002. PubMed ID: 17068086
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Apples to apples: improving the performance of motif finders and their significance analysis in the Twilight Zone.
    Ng P; Nagarajan N; Jones N; Keich U
    Bioinformatics; 2006 Jul; 22(14):e393-401. PubMed ID: 16873498
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Discriminative discovery of transcription factor binding sites from location data.
    Kawada Y; Sakakibara Y
    Proc IEEE Comput Syst Bioinform Conf; 2005; ():86-9. PubMed ID: 16447966
    [TBL] [Abstract][Full Text] [Related]  

  • 6. dPattern: transcription factor binding site (TFBS) discovery in human genome using a discriminative pattern analysis.
    Bae SH; Tang H; Wu J; Xie J; Kim S
    Bioinformatics; 2007 Oct; 23(19):2619-21. PubMed ID: 17550915
    [TBL] [Abstract][Full Text] [Related]  

  • 7. SPACER: identification of cis-regulatory elements with non-contiguous critical residues.
    Chakravarty A; Carlson JM; Khetani RS; DeZiel CE; Gross RH
    Bioinformatics; 2007 Apr; 23(8):1029-31. PubMed ID: 17470480
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Phylogeny based discovery of regulatory elements.
    Gertz J; Fay JC; Cohen BA
    BMC Bioinformatics; 2006 May; 7():266. PubMed ID: 16716228
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA.
    Pierstorff N; Bergman CM; Wiehe T
    Bioinformatics; 2006 Dec; 22(23):2858-64. PubMed ID: 17032682
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Predicting transcription factor binding sites using local over-representation and comparative genomics.
    Defrance M; Touzet H
    BMC Bioinformatics; 2006 Aug; 7():396. PubMed ID: 16945132
    [TBL] [Abstract][Full Text] [Related]  

  • 11. PEAKS: identification of regulatory motifs by their position in DNA sequences.
    Bellora N; Farré D; Mar Albà M
    Bioinformatics; 2007 Jan; 23(2):243-4. PubMed ID: 17098773
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A profile-based deterministic sequential Monte Carlo algorithm for motif discovery.
    Liang KC; Wang X; Anastassiou D
    Bioinformatics; 2008 Jan; 24(1):46-55. PubMed ID: 18024972
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Finding motifs from all sequences with and without binding sites.
    Leung HC; Chin FY
    Bioinformatics; 2006 Sep; 22(18):2217-23. PubMed ID: 16870937
    [TBL] [Abstract][Full Text] [Related]  

  • 14. RankMotif++: a motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors.
    Chen X; Hughes TR; Morris Q
    Bioinformatics; 2007 Jul; 23(13):i72-9. PubMed ID: 17646348
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A deterministic motif finding algorithm with application to the human genome.
    Hon LS; Jain AN
    Bioinformatics; 2006 May; 22(9):1047-54. PubMed ID: 16455748
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Combining comparative genomics with de novo motif discovery to identify human transcription factor DNA-binding motifs.
    Mao L; Zheng WJ
    BMC Bioinformatics; 2006 Dec; 7 Suppl 4(Suppl 4):S21. PubMed ID: 17217514
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Natural similarity measures between position frequency matrices with an application to clustering.
    Pape UJ; Rahmann S; Vingron M
    Bioinformatics; 2008 Feb; 24(3):350-7. PubMed ID: 18174183
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Context-specific independence mixture modeling for positional weight matrices.
    Georgi B; Schliep A
    Bioinformatics; 2006 Jul; 22(14):e166-73. PubMed ID: 16873468
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Pattern locator: a new tool for finding local sequence patterns in genomic DNA sequences.
    Mrázek J; Xie S
    Bioinformatics; 2006 Dec; 22(24):3099-100. PubMed ID: 17095514
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Sequence features of DNA binding sites reveal structural class of associated transcription factor.
    Narlikar L; Hartemink AJ
    Bioinformatics; 2006 Jan; 22(2):157-63. PubMed ID: 16267080
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 25.