809 related articles for article (PubMed ID: 16889794)
1. Evolutionary genomics of the HAD superfamily: understanding the structural adaptations and catalytic diversity in a superfamily of phosphoesterases and allied enzymes.
Burroughs AM; Allen KN; Dunaway-Mariano D; Aravind L
J Mol Biol; 2006 Sep; 361(5):1003-34. PubMed ID: 16889794
[TBL] [Abstract][Full Text] [Related]
2. Diversification of catalytic activities and ligand interactions in the protein fold shared by the sugar isomerases, eIF2B, DeoR transcription factors, acyl-CoA transferases and methenyltetrahydrofolate synthetase.
Anantharaman V; Aravind L
J Mol Biol; 2006 Feb; 356(3):823-42. PubMed ID: 16376935
[TBL] [Abstract][Full Text] [Related]
3. Classification and evolution of P-loop GTPases and related ATPases.
Leipe DD; Wolf YI; Koonin EV; Aravind L
J Mol Biol; 2002 Mar; 317(1):41-72. PubMed ID: 11916378
[TBL] [Abstract][Full Text] [Related]
4. The crystal structure of bacillus cereus phosphonoacetaldehyde hydrolase: insight into catalysis of phosphorus bond cleavage and catalytic diversification within the HAD enzyme superfamily.
Morais MC; Zhang W; Baker AS; Zhang G; Dunaway-Mariano D; Allen KN
Biochemistry; 2000 Aug; 39(34):10385-96. PubMed ID: 10956028
[TBL] [Abstract][Full Text] [Related]
5. The emergence of catalytic and structural diversity within the beta-clip fold.
Iyer LM; Aravind L
Proteins; 2004 Jun; 55(4):977-91. PubMed ID: 15146494
[TBL] [Abstract][Full Text] [Related]
6. Comparative genomics of the FtsK-HerA superfamily of pumping ATPases: implications for the origins of chromosome segregation, cell division and viral capsid packaging.
Iyer LM; Makarova KS; Koonin EV; Aravind L
Nucleic Acids Res; 2004; 32(17):5260-79. PubMed ID: 15466593
[TBL] [Abstract][Full Text] [Related]
7. Structural evolution of the protein kinase-like superfamily.
Scheeff ED; Bourne PE
PLoS Comput Biol; 2005 Oct; 1(5):e49. PubMed ID: 16244704
[TBL] [Abstract][Full Text] [Related]
8. Evolutionary history and higher order classification of AAA+ ATPases.
Iyer LM; Leipe DD; Koonin EV; Aravind L
J Struct Biol; 2004; 146(1-2):11-31. PubMed ID: 15037234
[TBL] [Abstract][Full Text] [Related]
9. Crystal structure of the CN-hydrolase SA0302 from the pathogenic bacterium Staphylococcus aureus belonging to the Nit and NitFhit Branch of the nitrilase superfamily.
Gordon RD; Qiu W; Romanov V; Lam K; Soloveychik M; Benetteraj D; Battaile KP; Chirgadze YN; Pai EF; Chirgadze NY
J Biomol Struct Dyn; 2013 Oct; 31(10):1057-65. PubMed ID: 23607706
[TBL] [Abstract][Full Text] [Related]
10. Analysis of the substrate specificity loop of the HAD superfamily cap domain.
Lahiri SD; Zhang G; Dai J; Dunaway-Mariano D; Allen KN
Biochemistry; 2004 Mar; 43(10):2812-20. PubMed ID: 15005616
[TBL] [Abstract][Full Text] [Related]
11. Monophyly of class I aminoacyl tRNA synthetase, USPA, ETFP, photolyase, and PP-ATPase nucleotide-binding domains: implications for protein evolution in the RNA.
Aravind L; Anantharaman V; Koonin EV
Proteins; 2002 Jul; 48(1):1-14. PubMed ID: 12012333
[TBL] [Abstract][Full Text] [Related]
12. Natural history of the E1-like superfamily: implication for adenylation, sulfur transfer, and ubiquitin conjugation.
Burroughs AM; Iyer LM; Aravind L
Proteins; 2009 Jun; 75(4):895-910. PubMed ID: 19089947
[TBL] [Abstract][Full Text] [Related]
13. Evolution of function in protein superfamilies, from a structural perspective.
Todd AE; Orengo CA; Thornton JM
J Mol Biol; 2001 Apr; 307(4):1113-43. PubMed ID: 11286560
[TBL] [Abstract][Full Text] [Related]
14. Structure of recombinant Haemophilus influenzae e (P4) acid phosphatase reveals a new member of the haloacid dehalogenase superfamily.
Felts RL; Ou Z; Reilly TJ; Tanner JJ
Biochemistry; 2007 Oct; 46(39):11110-9. PubMed ID: 17824671
[TBL] [Abstract][Full Text] [Related]
15. Functional Diversity of Haloacid Dehalogenase Superfamily Phosphatases from Saccharomyces cerevisiae: BIOCHEMICAL, STRUCTURAL, AND EVOLUTIONARY INSIGHTS.
Kuznetsova E; Nocek B; Brown G; Makarova KS; Flick R; Wolf YI; Khusnutdinova A; Evdokimova E; Jin K; Tan K; Hanson AD; Hasnain G; Zallot R; de Crécy-Lagard V; Babu M; Savchenko A; Joachimiak A; Edwards AM; Koonin EV; Yakunin AF
J Biol Chem; 2015 Jul; 290(30):18678-98. PubMed ID: 26071590
[TBL] [Abstract][Full Text] [Related]
16. Novel conserved domains in proteins with predicted roles in eukaryotic cell-cycle regulation, decapping and RNA stability.
Anantharaman V; Aravind L
BMC Genomics; 2004 Jul; 5(1):45. PubMed ID: 15257761
[TBL] [Abstract][Full Text] [Related]
17. Structure-guided approach for detecting large domain inserts in protein sequences as illustrated using the haloacid dehalogenase superfamily.
Pandya C; Dunaway-Mariano D; Xia Y; Allen KN
Proteins; 2014 Sep; 82(9):1896-906. PubMed ID: 24577717
[TBL] [Abstract][Full Text] [Related]
18. Cap-domain closure enables diverse substrate recognition by the C2-type haloacid dehalogenase-like sugar phosphatase Plasmodium falciparum HAD1.
Park J; Guggisberg AM; Odom AR; Tolia NH
Acta Crystallogr D Biol Crystallogr; 2015 Sep; 71(Pt 9):1824-34. PubMed ID: 26327372
[TBL] [Abstract][Full Text] [Related]
19. Computer analysis of bacterial haloacid dehalogenases defines a large superfamily of hydrolases with diverse specificity. Application of an iterative approach to database search.
Koonin EV; Tatusov RL
J Mol Biol; 1994 Nov; 244(1):125-32. PubMed ID: 7966317
[TBL] [Abstract][Full Text] [Related]
20. The many faces of the helix-turn-helix domain: transcription regulation and beyond.
Aravind L; Anantharaman V; Balaji S; Babu MM; Iyer LM
FEMS Microbiol Rev; 2005 Apr; 29(2):231-62. PubMed ID: 15808743
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]