BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

190 related articles for article (PubMed ID: 16891359)

  • 1. A computational study of nucleosomal DNA flexibility.
    Ruscio JZ; Onufriev A
    Biophys J; 2006 Dec; 91(11):4121-32. PubMed ID: 16891359
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Molecular dynamics simulations of a nucleosome and free DNA.
    Bishop TC
    J Biomol Struct Dyn; 2005 Jun; 22(6):673-86. PubMed ID: 15842172
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Structural flexibility of the nucleosome core particle at atomic resolution studied by molecular dynamics simulation.
    Roccatano D; Barthel A; Zacharias M
    Biopolymers; 2007 Apr 5-15; 85(5-6):407-21. PubMed ID: 17252562
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Structural mechanics of DNA wrapping in the nucleosome.
    Battistini F; Hunter CA; Gardiner EJ; Packer MJ
    J Mol Biol; 2010 Feb; 396(2):264-79. PubMed ID: 19932116
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Two arginine residues suppress the flexibility of nucleosomal DNA in the canonical nucleosome core.
    Kono H; Shirayama K; Arimura Y; Tachiwana H; Kurumizaka H
    PLoS One; 2015; 10(3):e0120635. PubMed ID: 25786215
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Nucleosomes in solution exist as a mixture of twist-defect states.
    Edayathumangalam RS; Weyermann P; Dervan PB; Gottesfeld JM; Luger K
    J Mol Biol; 2005 Jan; 345(1):103-14. PubMed ID: 15567414
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Dual role of DNA intrinsic curvature and flexibility in determining nucleosome stability.
    Anselmi C; Bocchinfuso G; De Santis P; Savino M; Scipioni A
    J Mol Biol; 1999 Mar; 286(5):1293-301. PubMed ID: 10064697
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Structure and dynamics of nucleosomal DNA.
    Muthurajan UM; Park YJ; Edayathumangalam RS; Suto RK; Chakravarthy S; Dyer PN; Luger K
    Biopolymers; 2003 Apr; 68(4):547-56. PubMed ID: 12666179
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Molecular dynamics simulations of B '-DNA: sequence effects on A-tract-induced bending and flexibility.
    McConnell KJ; Beveridge DL
    J Mol Biol; 2001 Nov; 314(1):23-40. PubMed ID: 11724529
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Brownian dynamics simulation of DNA unrolling from the nucleosome.
    Wocjan T; Klenin K; Langowski J
    J Phys Chem B; 2009 Mar; 113(9):2639-46. PubMed ID: 19708203
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution.
    Davey CA; Sargent DF; Luger K; Maeder AW; Richmond TJ
    J Mol Biol; 2002 Jun; 319(5):1097-113. PubMed ID: 12079350
    [TBL] [Abstract][Full Text] [Related]  

  • 12. DNA conformation and energy in nucleosome core: a theoretical approach.
    Norouzi D; Mohammad-Rafiee F
    J Biomol Struct Dyn; 2014; 32(1):104-14. PubMed ID: 23384279
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Computational analysis suggests a highly bendable, fragile structure for nucleosomal DNA.
    Nozaki T; Yachie N; Ogawa R; Saito R; Tomita M
    Gene; 2011 May; 476(1-2):10-4. PubMed ID: 21338662
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Bend-Induced Twist Waves and the Structure of Nucleosomal DNA.
    Skoruppa E; Nomidis SK; Marko JF; Carlon E
    Phys Rev Lett; 2018 Aug; 121(8):088101. PubMed ID: 30192578
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Molecular dynamics of DNA and nucleosomes in solution studied by fast-scanning atomic force microscopy.
    Suzuki Y; Higuchi Y; Hizume K; Yokokawa M; Yoshimura SH; Yoshikawa K; Takeyasu K
    Ultramicroscopy; 2010 May; 110(6):682-8. PubMed ID: 20236766
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A theoretical model for the prediction of sequence-dependent nucleosome thermodynamic stability.
    Anselmi C; Bocchinfuso G; De Santis P; Savino M; Scipioni A
    Biophys J; 2000 Aug; 79(2):601-13. PubMed ID: 10919995
    [TBL] [Abstract][Full Text] [Related]  

  • 17. DNA Elasticity from Short DNA to Nucleosomal DNA.
    Garai A; Saurabh S; Lansac Y; Maiti PK
    J Phys Chem B; 2015 Aug; 119(34):11146-56. PubMed ID: 26134918
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Simulations of SIN mutations and histone variants in human nucleosomes reveal altered protein-DNA and core histone interactions.
    Vijayalakshmi M; Shivashankar GV; Sowdhamini R
    J Biomol Struct Dyn; 2007 Dec; 25(3):207-18. PubMed ID: 17937483
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Structural dynamics of nucleosome core particle: comparison with nucleosomes containing histone variants.
    Ramaswamy A; Bahar I; Ioshikhes I
    Proteins; 2005 Feb; 58(3):683-96. PubMed ID: 15624215
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Structure of nucleosomal DNA at high salt concentration as probed by hydroxyl radical.
    Puhl HL; Behe MJ
    J Mol Biol; 1993 Feb; 229(4):827-32. PubMed ID: 8445650
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.