190 related articles for article (PubMed ID: 16891359)
1. A computational study of nucleosomal DNA flexibility.
Ruscio JZ; Onufriev A
Biophys J; 2006 Dec; 91(11):4121-32. PubMed ID: 16891359
[TBL] [Abstract][Full Text] [Related]
2. Molecular dynamics simulations of a nucleosome and free DNA.
Bishop TC
J Biomol Struct Dyn; 2005 Jun; 22(6):673-86. PubMed ID: 15842172
[TBL] [Abstract][Full Text] [Related]
3. Structural flexibility of the nucleosome core particle at atomic resolution studied by molecular dynamics simulation.
Roccatano D; Barthel A; Zacharias M
Biopolymers; 2007 Apr 5-15; 85(5-6):407-21. PubMed ID: 17252562
[TBL] [Abstract][Full Text] [Related]
4. Structural mechanics of DNA wrapping in the nucleosome.
Battistini F; Hunter CA; Gardiner EJ; Packer MJ
J Mol Biol; 2010 Feb; 396(2):264-79. PubMed ID: 19932116
[TBL] [Abstract][Full Text] [Related]
5. Two arginine residues suppress the flexibility of nucleosomal DNA in the canonical nucleosome core.
Kono H; Shirayama K; Arimura Y; Tachiwana H; Kurumizaka H
PLoS One; 2015; 10(3):e0120635. PubMed ID: 25786215
[TBL] [Abstract][Full Text] [Related]
6. Nucleosomes in solution exist as a mixture of twist-defect states.
Edayathumangalam RS; Weyermann P; Dervan PB; Gottesfeld JM; Luger K
J Mol Biol; 2005 Jan; 345(1):103-14. PubMed ID: 15567414
[TBL] [Abstract][Full Text] [Related]
7. Dual role of DNA intrinsic curvature and flexibility in determining nucleosome stability.
Anselmi C; Bocchinfuso G; De Santis P; Savino M; Scipioni A
J Mol Biol; 1999 Mar; 286(5):1293-301. PubMed ID: 10064697
[TBL] [Abstract][Full Text] [Related]
8. Structure and dynamics of nucleosomal DNA.
Muthurajan UM; Park YJ; Edayathumangalam RS; Suto RK; Chakravarthy S; Dyer PN; Luger K
Biopolymers; 2003 Apr; 68(4):547-56. PubMed ID: 12666179
[TBL] [Abstract][Full Text] [Related]
9. Molecular dynamics simulations of B '-DNA: sequence effects on A-tract-induced bending and flexibility.
McConnell KJ; Beveridge DL
J Mol Biol; 2001 Nov; 314(1):23-40. PubMed ID: 11724529
[TBL] [Abstract][Full Text] [Related]
10. Brownian dynamics simulation of DNA unrolling from the nucleosome.
Wocjan T; Klenin K; Langowski J
J Phys Chem B; 2009 Mar; 113(9):2639-46. PubMed ID: 19708203
[TBL] [Abstract][Full Text] [Related]
11. Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution.
Davey CA; Sargent DF; Luger K; Maeder AW; Richmond TJ
J Mol Biol; 2002 Jun; 319(5):1097-113. PubMed ID: 12079350
[TBL] [Abstract][Full Text] [Related]
12. DNA conformation and energy in nucleosome core: a theoretical approach.
Norouzi D; Mohammad-Rafiee F
J Biomol Struct Dyn; 2014; 32(1):104-14. PubMed ID: 23384279
[TBL] [Abstract][Full Text] [Related]
13. Computational analysis suggests a highly bendable, fragile structure for nucleosomal DNA.
Nozaki T; Yachie N; Ogawa R; Saito R; Tomita M
Gene; 2011 May; 476(1-2):10-4. PubMed ID: 21338662
[TBL] [Abstract][Full Text] [Related]
14. Bend-Induced Twist Waves and the Structure of Nucleosomal DNA.
Skoruppa E; Nomidis SK; Marko JF; Carlon E
Phys Rev Lett; 2018 Aug; 121(8):088101. PubMed ID: 30192578
[TBL] [Abstract][Full Text] [Related]
15. Molecular dynamics of DNA and nucleosomes in solution studied by fast-scanning atomic force microscopy.
Suzuki Y; Higuchi Y; Hizume K; Yokokawa M; Yoshimura SH; Yoshikawa K; Takeyasu K
Ultramicroscopy; 2010 May; 110(6):682-8. PubMed ID: 20236766
[TBL] [Abstract][Full Text] [Related]
16. A theoretical model for the prediction of sequence-dependent nucleosome thermodynamic stability.
Anselmi C; Bocchinfuso G; De Santis P; Savino M; Scipioni A
Biophys J; 2000 Aug; 79(2):601-13. PubMed ID: 10919995
[TBL] [Abstract][Full Text] [Related]
17. DNA Elasticity from Short DNA to Nucleosomal DNA.
Garai A; Saurabh S; Lansac Y; Maiti PK
J Phys Chem B; 2015 Aug; 119(34):11146-56. PubMed ID: 26134918
[TBL] [Abstract][Full Text] [Related]
18. Simulations of SIN mutations and histone variants in human nucleosomes reveal altered protein-DNA and core histone interactions.
Vijayalakshmi M; Shivashankar GV; Sowdhamini R
J Biomol Struct Dyn; 2007 Dec; 25(3):207-18. PubMed ID: 17937483
[TBL] [Abstract][Full Text] [Related]
19. Structural dynamics of nucleosome core particle: comparison with nucleosomes containing histone variants.
Ramaswamy A; Bahar I; Ioshikhes I
Proteins; 2005 Feb; 58(3):683-96. PubMed ID: 15624215
[TBL] [Abstract][Full Text] [Related]
20. Structure of nucleosomal DNA at high salt concentration as probed by hydroxyl radical.
Puhl HL; Behe MJ
J Mol Biol; 1993 Feb; 229(4):827-32. PubMed ID: 8445650
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]