These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

109 related articles for article (PubMed ID: 16893182)

  • 1. Interpreting oligonucleotide microarray data to determine RNA secondary structure: application to the 3' end of Bombyx mori R2 RNA.
    Duan S; Mathews DH; Turner DH
    Biochemistry; 2006 Aug; 45(32):9819-32. PubMed ID: 16893182
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Dynalign: an algorithm for finding the secondary structure common to two RNA sequences.
    Mathews DH; Turner DH
    J Mol Biol; 2002 Mar; 317(2):191-203. PubMed ID: 11902836
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Facilitating RNA structure prediction with microarrays.
    Kierzek E; Kierzek R; Turner DH; Catrina IE
    Biochemistry; 2006 Jan; 45(2):581-93. PubMed ID: 16401087
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure.
    Mathews DH; Sabina J; Zuker M; Turner DH
    J Mol Biol; 1999 May; 288(5):911-40. PubMed ID: 10329189
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Isoenergetic penta- and hexanucleotide microarray probing and chemical mapping provide a secondary structure model for an RNA element orchestrating R2 retrotransposon protein function.
    Kierzek E; Kierzek R; Moss WN; Christensen SM; Eickbush TH; Turner DH
    Nucleic Acids Res; 2008 Apr; 36(6):1770-82. PubMed ID: 18252773
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Secondary structure model of the RNA recognized by the reverse transcriptase from the R2 retrotransposable element.
    Mathews DH; Banerjee AR; Luan DD; Eickbush TH; Turner DH
    RNA; 1997 Jan; 3(1):1-16. PubMed ID: 8990394
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Binding of short oligonucleotides to RNA: studies of the binding of common RNA structural motifs to isoenergetic microarrays.
    Kierzek E
    Biochemistry; 2009 Dec; 48(48):11344-56. PubMed ID: 19835418
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The calculation of plant 5S rRNAs secondary structure.
    Joachimiak A; Nalaskowska M; Barciszewska MZ; Mashkova TD; Barciszewski J
    Acta Biochim Pol; 1989; 36(3-4):215-23. PubMed ID: 2485998
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Revolutions in RNA secondary structure prediction.
    Mathews DH
    J Mol Biol; 2006 Jun; 359(3):526-32. PubMed ID: 16500677
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Moments of the Boltzmann distribution for RNA secondary structures.
    Miklós I; Meyer IM; Nagy B
    Bull Math Biol; 2005 Sep; 67(5):1031-47. PubMed ID: 15998494
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Structural RNA has lower folding energy than random RNA of the same dinucleotide frequency.
    Clote P; Ferré F; Kranakis E; Krizanc D
    RNA; 2005 May; 11(5):578-91. PubMed ID: 15840812
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Cofolga: a genetic algorithm for finding the common folding of two RNAs.
    Taneda A
    Comput Biol Chem; 2005 Apr; 29(2):111-9. PubMed ID: 15833439
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Secondary structure models of the 3' untranslated regions of diverse R2 RNAs.
    Ruschak AM; Mathews DH; Bibillo A; Spinelli SL; Childs JL; Eickbush TH; Turner DH
    RNA; 2004 Jun; 10(6):978-87. PubMed ID: 15146081
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The equilibrium partition function and base pair binding probabilities for RNA secondary structure.
    McCaskill JS
    Biopolymers; 1990; 29(6-7):1105-19. PubMed ID: 1695107
    [TBL] [Abstract][Full Text] [Related]  

  • 15. [Predicting RNA secondary structures including pseudoknots by covariance with stacking and minimum free energy].
    Yang J; Luo Z; Fang X; Wang J; Tang K
    Sheng Wu Gong Cheng Xue Bao; 2008 Apr; 24(4):659-64. PubMed ID: 18616179
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Thermodynamic characterization of single mismatches found in naturally occurring RNA.
    Davis AR; Znosko BM
    Biochemistry; 2007 Nov; 46(46):13425-36. PubMed ID: 17958380
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Structural similarity of E. coli 5S rRNA in solution and within the ribosome.
    Skibinska L; Banachowicz E; Gapiński J; Patkowski A; Barciszewski J
    Biopolymers; 2004 Feb; 73(3):316-25. PubMed ID: 14755567
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Computational modeling analyses of RNA secondary structures and phylogenetic inference of evolutionary conserved 5S rRNA in the prokaryotes.
    Singh V; Somvanshi P
    J Mol Graph Model; 2009 Apr; 27(7):770-6. PubMed ID: 19217331
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Assignments of the iminoproton resonances of Bombyx mori tRNA(UCCGly) and the comparison of its structure and stability with those of tRNA(GCCGly).
    Amano M; Kyogoku Y; Kawakami M
    Nucleic Acids Symp Ser; 1990; (22):111-2. PubMed ID: 2101887
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data.
    Parisien M; Major F
    Nature; 2008 Mar; 452(7183):51-5. PubMed ID: 18322526
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.