403 related articles for article (PubMed ID: 16895925)
21. SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference.
Paraskevis D; Deforche K; Lemey P; Magiorkinis G; Hatzakis A; Vandamme AM
Bioinformatics; 2005 Apr; 21(7):1274-5. PubMed ID: 15546940
[TBL] [Abstract][Full Text] [Related]
22. Inferring horizontal transfers in the presence of rearrangements by the minimum evolution criterion.
Birin H; Gal-Or Z; Elias I; Tuller T
Bioinformatics; 2008 Mar; 24(6):826-32. PubMed ID: 18203769
[TBL] [Abstract][Full Text] [Related]
23. Efficient inference on known phylogenetic trees using Poisson regression.
Rosset S
Bioinformatics; 2007 Jan; 23(2):e142-7. PubMed ID: 17237083
[TBL] [Abstract][Full Text] [Related]
24. Are you my mother? Bayesian phylogenetic inference of recombination among putative parental strains.
Sinsheimer JS; Suchard MA; Dorman KS; Fang F; Weiss RE
Appl Bioinformatics; 2003; 2(3):131-44. PubMed ID: 15130798
[TBL] [Abstract][Full Text] [Related]
25. Dual multiple change-point model leads to more accurate recombination detection.
Minin VN; Dorman KS; Fang F; Suchard MA
Bioinformatics; 2005 Jul; 21(13):3034-42. PubMed ID: 15914546
[TBL] [Abstract][Full Text] [Related]
26. SequenceLDhot: detecting recombination hotspots.
Fearnhead P
Bioinformatics; 2006 Dec; 22(24):3061-6. PubMed ID: 17060358
[TBL] [Abstract][Full Text] [Related]
27. A sliding window-based method to detect selective constraints in protein-coding genes and its application to RNA viruses.
Fares MA; Elena SF; Ortiz J; Moya A; Barrio E
J Mol Evol; 2002 Nov; 55(5):509-21. PubMed ID: 12399925
[TBL] [Abstract][Full Text] [Related]
28. DNA assembly with gaps (Dawg): simulating sequence evolution.
Cartwright RA
Bioinformatics; 2005 Nov; 21 Suppl 3():iii31-8. PubMed ID: 16306390
[TBL] [Abstract][Full Text] [Related]
29. Towards realistic codon models: among site variability and dependency of synonymous and non-synonymous rates.
Mayrose I; Doron-Faigenboim A; Bacharach E; Pupko T
Bioinformatics; 2007 Jul; 23(13):i319-27. PubMed ID: 17646313
[TBL] [Abstract][Full Text] [Related]
30. A gamma mixture model better accounts for among site rate heterogeneity.
Mayrose I; Friedman N; Pupko T
Bioinformatics; 2005 Sep; 21 Suppl 2():ii151-8. PubMed ID: 16204095
[TBL] [Abstract][Full Text] [Related]
31. Recombination and natural selection in hepatitis E virus genotypes.
Chen X; Zhang Q; He C; Zhang L; Li J; Zhang W; Cao W; Lv YG; Liu Z; Zhang JX; Shao ZJ
J Med Virol; 2012 Sep; 84(9):1396-407. PubMed ID: 22825818
[TBL] [Abstract][Full Text] [Related]
32. Mapping sites of positive selection and amino acid diversification in the HIV genome: an alternative approach to vaccine design?
de Oliveira T; Salemi M; Gordon M; Vandamme AM; van Rensburg EJ; Engelbrecht S; Coovadia HM; Cassol S
Genetics; 2004 Jul; 167(3):1047-58. PubMed ID: 15280222
[TBL] [Abstract][Full Text] [Related]
33. A Bayesian model comparison approach to inferring positive selection.
Scheffler K; Seoighe C
Mol Biol Evol; 2005 Dec; 22(12):2531-40. PubMed ID: 16120799
[TBL] [Abstract][Full Text] [Related]
34. Representation in stochastic search for phylogenetic tree reconstruction.
Weber G; Ohno-Machado L; Shieber S
J Biomed Inform; 2006 Feb; 39(1):43-50. PubMed ID: 16359929
[TBL] [Abstract][Full Text] [Related]
35. Assessment of phylogenomic and orthology approaches for phylogenetic inference.
Dutilh BE; van Noort V; van der Heijden RT; Boekhout T; Snel B; Huynen MA
Bioinformatics; 2007 Apr; 23(7):815-24. PubMed ID: 17237036
[TBL] [Abstract][Full Text] [Related]
36. A phylogenetic method for detecting positive epistasis in gene sequences and its application to RNA virus evolution.
Shapiro B; Rambaut A; Pybus OG; Holmes EC
Mol Biol Evol; 2006 Sep; 23(9):1724-30. PubMed ID: 16774976
[TBL] [Abstract][Full Text] [Related]
37. Recovering haplotype structure through recombination and gene conversion.
Lajoie M; El-Mabrouk N
Bioinformatics; 2005 Sep; 21 Suppl 2():ii173-9. PubMed ID: 16204098
[TBL] [Abstract][Full Text] [Related]
38. Potential use of host-derived genome signatures to root virus phylogenies.
Simmons MP
Mol Phylogenet Evol; 2008 Dec; 49(3):969-78. PubMed ID: 18793737
[TBL] [Abstract][Full Text] [Related]
39. The effect of insertions, deletions, and alignment errors on the branch-site test of positive selection.
Fletcher W; Yang Z
Mol Biol Evol; 2010 Oct; 27(10):2257-67. PubMed ID: 20447933
[TBL] [Abstract][Full Text] [Related]
40. Improved techniques for the identification of pseudogenes.
Coin L; Durbin R
Bioinformatics; 2004 Aug; 20 Suppl 1():i94-100. PubMed ID: 15262786
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
