These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

287 related articles for article (PubMed ID: 16917862)

  • 1. Software news and updates. Carma: a molecular dynamics analysis program.
    Glykos NM
    J Comput Chem; 2006 Nov; 27(14):1765-8. PubMed ID: 16917862
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Procrustean rotation in concert with principal component analysis of molecular dynamics trajectories: Quantifying global and local differences between conformational samples.
    Oblinsky DG; Vanschouwen BM; Gordon HL; Rothstein SM
    J Chem Phys; 2009 Dec; 131(22):225102. PubMed ID: 20001084
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Local feature analysis: a statistical theory for reproducible essential dynamics of large macromolecules.
    Zhang Z; Wriggers W
    Proteins; 2006 Aug; 64(2):391-403. PubMed ID: 16700056
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Molecular dynamics of large-ring cyclodextrins: principal component analysis of the conformational interconversions.
    Gotsev MG; Ivanov PM
    J Phys Chem B; 2009 Apr; 113(17):5752-9. PubMed ID: 19344106
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Full correlation analysis of conformational protein dynamics.
    Lange OF; Grubmüller H
    Proteins; 2008 Mar; 70(4):1294-312. PubMed ID: 17876828
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Wordom: a program for efficient analysis of molecular dynamics simulations.
    Seeber M; Cecchini M; Rao F; Settanni G; Caflisch A
    Bioinformatics; 2007 Oct; 23(19):2625-7. PubMed ID: 17717034
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Application of principal component analysis in protein unfolding: an all-atom molecular dynamics simulation study.
    Das A; Mukhopadhyay C
    J Chem Phys; 2007 Oct; 127(16):165103. PubMed ID: 17979396
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Identification of tunnels in proteins, nucleic acids, inorganic materials and molecular ensembles.
    Damborský J; Petrek M; Banás P; Otyepka M
    Biotechnol J; 2007 Jan; 2(1):62-7. PubMed ID: 17183511
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A 45-ns molecular dynamics simulation of hemoglobin in water by vectorizing and parallelizing COSMOS90 on the earth simulator: dynamics of tertiary and quaternary structures.
    Saito M; Okazaki I
    J Comput Chem; 2007 Apr; 28(6):1129-36. PubMed ID: 17279499
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Grcarma: A fully automated task-oriented interface for the analysis of molecular dynamics trajectories.
    Koukos PI; Glykos NM
    J Comput Chem; 2013 Oct; 34(26):2310-2. PubMed ID: 24159629
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Effective numbers of modes applied to analysis of internal dynamics of weakly bound clusters.
    Rybakov AA; Belega ED; Trubnikov DN
    J Chem Phys; 2010 Oct; 133(14):144101. PubMed ID: 20949981
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Multivariate frequency domain analysis of protein dynamics.
    Matsunaga Y; Fuchigami S; Kidera A
    J Chem Phys; 2009 Mar; 130(12):124104. PubMed ID: 19334805
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Convergence of molecular dynamics simulations of membrane proteins.
    Grossfield A; Feller SE; Pitman MC
    Proteins; 2007 Apr; 67(1):31-40. PubMed ID: 17243153
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Optimizing principal components analysis of event-related potentials: matrix type, factor loading weighting, extraction, and rotations.
    Dien J; Beal DJ; Berg P
    Clin Neurophysiol; 2005 Aug; 116(8):1808-25. PubMed ID: 15996897
    [TBL] [Abstract][Full Text] [Related]  

  • 15. JEDi: java essential dynamics inspector - a molecular trajectory analysis toolkit.
    David CC; Avery CS; Jacobs DJ
    BMC Bioinformatics; 2021 May; 22(1):226. PubMed ID: 33932974
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Dihedral angle principal component analysis of molecular dynamics simulations.
    Altis A; Nguyen PH; Hegger R; Stock G
    J Chem Phys; 2007 Jun; 126(24):244111. PubMed ID: 17614541
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Isoelectric point determination of proteins and other macromolecules: oscillating method.
    Sillero A; Maldonado A
    Comput Biol Med; 2006 Feb; 36(2):157-66. PubMed ID: 16389075
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Apo adenylate kinase encodes its holo form: a principal component and varimax analysis.
    Cukier RI
    J Phys Chem B; 2009 Feb; 113(6):1662-72. PubMed ID: 19159290
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Dynamics of water in the hydration shells of C60: molecular dynamics simulation using a coarse-grained model.
    Choudhury N
    J Phys Chem B; 2007 Sep; 111(35):10474-80. PubMed ID: 17696526
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Can descriptors of the electron density distribution help to distinguish functional groups?
    Burton J; Meurice N; Leherte L; Vercauteren DP
    J Chem Inf Model; 2008 Oct; 48(10):1974-83. PubMed ID: 18831545
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 15.