521 related articles for article (PubMed ID: 16949606)
1. Computational studies of tryptophanyl-tRNA synthetase: activation of ATP by induced-fit.
Kapustina M; Carter CW
J Mol Biol; 2006 Oct; 362(5):1159-80. PubMed ID: 16949606
[TBL] [Abstract][Full Text] [Related]
2. Interconversion of ATP binding and conformational free energies by tryptophanyl-tRNA synthetase: structures of ATP bound to open and closed, pre-transition-state conformations.
Retailleau P; Huang X; Yin Y; Hu M; Weinreb V; Vachette P; Vonrhein C; Bricogne G; Roversi P; Ilyin V; Carter CW
J Mol Biol; 2003 Jan; 325(1):39-63. PubMed ID: 12473451
[TBL] [Abstract][Full Text] [Related]
3. Quantitative analysis of crystal growth. Tryptophanyl-tRNA synthetase crystal polymorphism and its relationship to catalysis.
Carter CW; Doublié S; Coleman DE
J Mol Biol; 1994 May; 238(3):346-65. PubMed ID: 8176729
[TBL] [Abstract][Full Text] [Related]
4. Crystal structure of tryptophanyl-tRNA synthetase complexed with adenosine-5' tetraphosphate: evidence for distributed use of catalytic binding energy in amino acid activation by class I aminoacyl-tRNA synthetases.
Retailleau P; Weinreb V; Hu M; Carter CW
J Mol Biol; 2007 May; 369(1):108-28. PubMed ID: 17428498
[TBL] [Abstract][Full Text] [Related]
5. Escherichia coli tryptophanyl-tRNA synthetase mutants selected for tryptophan auxotrophy implicate the dimer interface in optimizing amino acid binding.
Sever S; Rogers K; Rogers MJ; Carter C; Söll D
Biochemistry; 1996 Jan; 35(1):32-40. PubMed ID: 8555191
[TBL] [Abstract][Full Text] [Related]
6. Binding free energies and free energy components from molecular dynamics and Poisson-Boltzmann calculations. Application to amino acid recognition by aspartyl-tRNA synthetase.
Archontis G; Simonson T; Karplus M
J Mol Biol; 2001 Feb; 306(2):307-27. PubMed ID: 11237602
[TBL] [Abstract][Full Text] [Related]
7. Selective Inhibition of Bacterial Tryptophanyl-tRNA Synthetases by Indolmycin Is Mechanism-based.
Williams TL; Yin YW; Carter CW
J Biol Chem; 2016 Jan; 291(1):255-65. PubMed ID: 26555258
[TBL] [Abstract][Full Text] [Related]
8. Structural snapshots of the KMSKS loop rearrangement for amino acid activation by bacterial tyrosyl-tRNA synthetase.
Kobayashi T; Takimura T; Sekine R; Kelly VP; Kamata K; Sakamoto K; Nishimura S; Yokoyama S
J Mol Biol; 2005 Feb; 346(1):105-17. PubMed ID: 15663931
[TBL] [Abstract][Full Text] [Related]
9. Independent saturation of three TrpRS subsites generates a partially assembled state similar to those observed in molecular simulations.
Laowanapiban P; Kapustina M; Vonrhein C; Delarue M; Koehl P; Carter CW
Proc Natl Acad Sci U S A; 2009 Feb; 106(6):1790-5. PubMed ID: 19174517
[TBL] [Abstract][Full Text] [Related]
10. Structures of tryptophanyl-tRNA synthetase II from Deinococcus radiodurans bound to ATP and tryptophan. Insight into subunit cooperativity and domain motions linked to catalysis.
Buddha MR; Crane BR
J Biol Chem; 2005 Sep; 280(36):31965-73. PubMed ID: 15998643
[TBL] [Abstract][Full Text] [Related]
11. Allostery and conformational free energy changes in human tryptophanyl-tRNA synthetase from essential dynamics and structure networks.
Bhattacharyya M; Ghosh A; Hansia P; Vishveshwara S
Proteins; 2010 Feb; 78(3):506-17. PubMed ID: 19768679
[TBL] [Abstract][Full Text] [Related]
12. A conformational transition state accompanies tryptophan activation by B. stearothermophilus tryptophanyl-tRNA synthetase.
Kapustina M; Weinreb V; Li L; Kuhlman B; Carter CW
Structure; 2007 Oct; 15(10):1272-84. PubMed ID: 17937916
[TBL] [Abstract][Full Text] [Related]
13. Investigation of the mechanism of domain closure in citrate synthase by molecular dynamics simulation.
Roccatano D; Mark AE; Hayward S
J Mol Biol; 2001 Jul; 310(5):1039-53. PubMed ID: 11501994
[TBL] [Abstract][Full Text] [Related]
14. Insights into activation and RNA binding of trp RNA-binding attenuation protein (TRAP) through all-atom simulations.
Murtola T; Vattulainen I; Falck E
Proteins; 2008 Jun; 71(4):1995-2011. PubMed ID: 18186477
[TBL] [Abstract][Full Text] [Related]
15. Mg2+-free Bacillus stearothermophilus tryptophanyl-tRNA synthetase retains a major fraction of the overall rate enhancement for tryptophan activation.
Weinreb V; Carter CW
J Am Chem Soc; 2008 Jan; 130(4):1488-94. PubMed ID: 18173270
[TBL] [Abstract][Full Text] [Related]
16. Ligand dependent intra and inter subunit communication in human tryptophanyl tRNA synthetase as deduced from the dynamics of structure networks.
Hansia P; Ghosh A; Vishveshwara S
Mol Biosyst; 2009 Dec; 5(12):1860-72. PubMed ID: 19763332
[TBL] [Abstract][Full Text] [Related]
17. Mg2+-assisted catalysis by B. stearothermophilus TrpRS is promoted by allosteric effects.
Weinreb V; Li L; Campbell CL; Kaguni LS; Carter CW
Structure; 2009 Jul; 17(7):952-64. PubMed ID: 19604475
[TBL] [Abstract][Full Text] [Related]
18. Predicting the open conformations of protein kinases using molecular dynamics simulations.
Bjarnadottir U; Nielsen JE
Biopolymers; 2012 Jan; 97(1):65-72. PubMed ID: 21858778
[TBL] [Abstract][Full Text] [Related]
19. Escapement mechanisms: Efficient free energy transduction by reciprocally-coupled gating.
Carter CW
Proteins; 2020 May; 88(5):710-717. PubMed ID: 31743491
[TBL] [Abstract][Full Text] [Related]
20. Crystallographic studies on multiple conformational states of active-site loops in pyrrolysyl-tRNA synthetase.
Yanagisawa T; Ishii R; Fukunaga R; Kobayashi T; Sakamoto K; Yokoyama S
J Mol Biol; 2008 May; 378(3):634-52. PubMed ID: 18387634
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
