233 related articles for article (PubMed ID: 16951087)
1. Evolution of the human immunodeficiency virus envelope gene is dominated by purifying selection.
Edwards CT; Holmes EC; Pybus OG; Wilson DJ; Viscidi RP; Abrams EJ; Phillips RE; Drummond AJ
Genetics; 2006 Nov; 174(3):1441-53. PubMed ID: 16951087
[TBL] [Abstract][Full Text] [Related]
2. Influence of random genetic drift on human immunodeficiency virus type 1 env evolution during chronic infection.
Shriner D; Shankarappa R; Jensen MA; Nickle DC; Mittler JE; Margolick JB; Mullins JI
Genetics; 2004 Mar; 166(3):1155-64. PubMed ID: 15082537
[TBL] [Abstract][Full Text] [Related]
3. Linkage disequilibrium test implies a large effective population number for HIV in vivo.
Rouzine IM; Coffin JM
Proc Natl Acad Sci U S A; 1999 Sep; 96(19):10758-63. PubMed ID: 10485899
[TBL] [Abstract][Full Text] [Related]
4. Evidence for heterogeneous selective pressures in the evolution of the env gene in different human immunodeficiency virus type 1 subtypes.
Travers SA; O'Connell MJ; McCormack GP; McInerney JO
J Virol; 2005 Feb; 79(3):1836-41. PubMed ID: 15650207
[TBL] [Abstract][Full Text] [Related]
5. Impact of CCR5delta32 host genetic background and disease progression on HIV-1 intrahost evolutionary processes: efficient hypothesis testing through hierarchical phylogenetic models.
Edo-Matas D; Lemey P; Tom JA; Serna-Bolea C; van den Blink AE; van 't Wout AB; Schuitemaker H; Suchard MA
Mol Biol Evol; 2011 May; 28(5):1605-16. PubMed ID: 21135151
[TBL] [Abstract][Full Text] [Related]
6. Transition between stochastic evolution and deterministic evolution in the presence of selection: general theory and application to virology.
Rouzine IM; Rodrigo A; Coffin JM
Microbiol Mol Biol Rev; 2001 Mar; 65(1):151-85. PubMed ID: 11238990
[TBL] [Abstract][Full Text] [Related]
7. The structure of genealogies in the presence of purifying selection: a fitness-class coalescent.
Walczak AM; Nicolaisen LE; Plotkin JB; Desai MM
Genetics; 2012 Feb; 190(2):753-79. PubMed ID: 22135349
[TBL] [Abstract][Full Text] [Related]
8. Coalescent Inference Using Serially Sampled, High-Throughput Sequencing Data from Intrahost HIV Infection.
Dialdestoro K; Sibbesen JA; Maretty L; Raghwani J; Gall A; Kellam P; Pybus OG; Hein J; Jenkins PA
Genetics; 2016 Apr; 202(4):1449-72. PubMed ID: 26857628
[TBL] [Abstract][Full Text] [Related]
9. Restricted genetic diversity of HIV-1 subtype C envelope glycoprotein from perinatally infected Zambian infants.
Zhang H; Tully DC; Hoffmann FG; He J; Kankasa C; Wood C
PLoS One; 2010 Feb; 5(2):e9294. PubMed ID: 20174636
[TBL] [Abstract][Full Text] [Related]
10. Foundational errors in the Neutral and Nearly-Neutral theories of evolution in relation to the Synthetic Theory: is a new evolutionary paradigm necessary?
Valenzuela CY
Biol Res; 2013; 46(2):101-19. PubMed ID: 23959008
[TBL] [Abstract][Full Text] [Related]
11. Purifying selection, drift, and reversible mutation with arbitrarily high mutation rates.
Charlesworth B; Jain K
Genetics; 2014 Dec; 198(4):1587-602. PubMed ID: 25230951
[TBL] [Abstract][Full Text] [Related]
12. Evidence of differential HLA class I-mediated viral evolution in functional and accessory/regulatory genes of HIV-1.
Brumme ZL; Brumme CJ; Heckerman D; Korber BT; Daniels M; Carlson J; Kadie C; Bhattacharya T; Chui C; Szinger J; Mo T; Hogg RS; Montaner JS; Frahm N; Brander C; Walker BD; Harrigan PR
PLoS Pathog; 2007 Jul; 3(7):e94. PubMed ID: 17616974
[TBL] [Abstract][Full Text] [Related]
13. Molecular cloning and analysis of functional envelope genes from human immunodeficiency virus type 1 sequence subtypes A through G. The WHO and NIAID Networks for HIV Isolation and Characterization.
Gao F; Morrison SG; Robertson DL; Thornton CL; Craig S; Karlsson G; Sodroski J; Morgado M; Galvao-Castro B; von Briesen H; Beddows S; Weber J; Sharp PM; Shaw GM; Hahn BH
J Virol; 1996 Mar; 70(3):1651-67. PubMed ID: 8627686
[TBL] [Abstract][Full Text] [Related]
14. Passive sexual transmission of human immunodeficiency virus type 1 variants and adaptation in new hosts.
Frater AJ; Edwards CT; McCarthy N; Fox J; Brown H; Milicic A; Mackie N; Pillay T; Drijfhout JW; Dustan S; Clarke JR; Holmes EC; Zhang HT; Pfafferott K; Goulder PJ; McClure MO; Weber J; Phillips RE; Fidler S
J Virol; 2006 Jul; 80(14):7226-34. PubMed ID: 16809328
[TBL] [Abstract][Full Text] [Related]
15. Estimating the timing of mother-to-child transmission of the human immunodeficiency virus type 1 using a viral molecular evolution model.
Chaillon A; Samleerat T; Zoveda F; Ballesteros S; Moreau A; Ngo-Giang-Huong N; Jourdain G; Gianella S; Lallemant M; Depaulis F; Barin F
PLoS One; 2014; 9(4):e90421. PubMed ID: 24717647
[TBL] [Abstract][Full Text] [Related]
16. Population genetic estimation of the loss of genetic diversity during horizontal transmission of HIV-1.
Edwards CT; Holmes EC; Wilson DJ; Viscidi RP; Abrams EJ; Phillips RE; Drummond AJ
BMC Evol Biol; 2006 Mar; 6():28. PubMed ID: 16556318
[TBL] [Abstract][Full Text] [Related]
17. Inference of demographic history from genealogical trees using reversible jump Markov chain Monte Carlo.
Opgen-Rhein R; Fahrmeir L; Strimmer K
BMC Evol Biol; 2005 Jan; 5():6. PubMed ID: 15663782
[TBL] [Abstract][Full Text] [Related]
18. The genealogy of a sequence subject to purifying selection at multiple sites.
Williamson S; Orive ME
Mol Biol Evol; 2002 Aug; 19(8):1376-84. PubMed ID: 12140250
[TBL] [Abstract][Full Text] [Related]
19. Inferring epidemiological dynamics with Bayesian coalescent inference: the merits of deterministic and stochastic models.
Popinga A; Vaughan T; Stadler T; Drummond AJ
Genetics; 2015 Feb; 199(2):595-607. PubMed ID: 25527289
[TBL] [Abstract][Full Text] [Related]
20. Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci.
Gill MS; Lemey P; Faria NR; Rambaut A; Shapiro B; Suchard MA
Mol Biol Evol; 2013 Mar; 30(3):713-24. PubMed ID: 23180580
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
