180 related articles for article (PubMed ID: 16953574)
1. Computational analysis of the mode of binding of 8-oxoguanine to formamidopyrimidine-DNA glycosylase.
Song K; Hornak V; de Los Santos C; Grollman AP; Simmerling C
Biochemistry; 2006 Sep; 45(36):10886-94. PubMed ID: 16953574
[TBL] [Abstract][Full Text] [Related]
2. Structural Insight into the Discrimination between 8-Oxoguanine Glycosidic Conformers by DNA Repair Enzymes: A Molecular Dynamics Study of Human Oxoguanine Glycosylase 1 and Formamidopyrimidine-DNA Glycosylase.
Sowlati-Hashjin S; Wetmore SD
Biochemistry; 2018 Feb; 57(7):1144-1154. PubMed ID: 29320630
[TBL] [Abstract][Full Text] [Related]
3. Functional flexibility of Bacillus stearothermophilus formamidopyrimidine DNA-glycosylase.
Amara P; Serre L
DNA Repair (Amst); 2006 Aug; 5(8):947-58. PubMed ID: 16857432
[TBL] [Abstract][Full Text] [Related]
4. Substrate discrimination by formamidopyrimidine-DNA glycosylase: a mutational analysis.
Zaika EI; Perlow RA; Matz E; Broyde S; Gilboa R; Grollman AP; Zharkov DO
J Biol Chem; 2004 Feb; 279(6):4849-61. PubMed ID: 14607836
[TBL] [Abstract][Full Text] [Related]
5. DNA lesion recognition by the bacterial repair enzyme MutM.
Fromme JC; Verdine GL
J Biol Chem; 2003 Dec; 278(51):51543-8. PubMed ID: 14525999
[TBL] [Abstract][Full Text] [Related]
6. Structural and biochemical studies of a plant formamidopyrimidine-DNA glycosylase reveal why eukaryotic Fpg glycosylases do not excise 8-oxoguanine.
Duclos S; Aller P; Jaruga P; Dizdaroglu M; Wallace SS; DoubliƩ S
DNA Repair (Amst); 2012 Sep; 11(9):714-25. PubMed ID: 22789755
[TBL] [Abstract][Full Text] [Related]
7. Molecular dynamics simulation of the opposite-base preference and interactions in the active site of formamidopyrimidine-DNA glycosylase.
Popov AV; Endutkin AV; Vorobjev YN; Zharkov DO
BMC Struct Biol; 2017 May; 17(1):5. PubMed ID: 28482831
[TBL] [Abstract][Full Text] [Related]
8. A dynamic checkpoint in oxidative lesion discrimination by formamidopyrimidine-DNA glycosylase.
Li H; Endutkin AV; Bergonzo C; Campbell AJ; de los Santos C; Grollman A; Zharkov DO; Simmerling C
Nucleic Acids Res; 2016 Jan; 44(2):683-94. PubMed ID: 26553802
[TBL] [Abstract][Full Text] [Related]
9. Structural basis for the recognition of the FapydG lesion (2,6-diamino-4-hydroxy-5-formamidopyrimidine) by formamidopyrimidine-DNA glycosylase.
Coste F; Ober M; Carell T; Boiteux S; Zelwer C; Castaing B
J Biol Chem; 2004 Oct; 279(42):44074-83. PubMed ID: 15249553
[TBL] [Abstract][Full Text] [Related]
10. Base-Independent DNA Base-Excision Repair of 8-Oxoguanine.
Kreppel A; Blank ID; Ochsenfeld C
J Am Chem Soc; 2018 Apr; 140(13):4522-4526. PubMed ID: 29578340
[TBL] [Abstract][Full Text] [Related]
11. Insights into the DNA repair process by the formamidopyrimidine-DNA glycosylase investigated by molecular dynamics.
Amara P; Serre L; Castaing B; Thomas A
Protein Sci; 2004 Aug; 13(8):2009-21. PubMed ID: 15273302
[TBL] [Abstract][Full Text] [Related]
12. Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme.
Qi Y; Spong MC; Nam K; Banerjee A; Jiralerspong S; Karplus M; Verdine GL
Nature; 2009 Dec; 462(7274):762-6. PubMed ID: 20010681
[TBL] [Abstract][Full Text] [Related]
13. Strandwise translocation of a DNA glycosylase on undamaged DNA.
Qi Y; Nam K; Spong MC; Banerjee A; Sung RJ; Zhang M; Karplus M; Verdine GL
Proc Natl Acad Sci U S A; 2012 Jan; 109(4):1086-91. PubMed ID: 22219368
[TBL] [Abstract][Full Text] [Related]
14. The Corynebacterium pseudotuberculosis genome contains two formamidopyrimidine-DNA glycosylase enzymes, only one of which recognizes and excises 8-oxoguanine lesion.
Arantes LS; Nova LG; Resende BC; Bitar M; Coelho IE; Miyoshi A; Azevedo VA; Lara Dos Santos L; Machado CR; de Oliveira Lopes D
Gene; 2016 Jan; 575(2 Pt 1):233-43. PubMed ID: 26341054
[TBL] [Abstract][Full Text] [Related]
15. Molecular simulations reveal a common binding mode for glycosylase binding of oxidatively damaged DNA lesions.
Song K; Kelso C; de los Santos C; Grollman AP; Simmerling C
J Am Chem Soc; 2007 Nov; 129(47):14536-7. PubMed ID: 17988127
[TBL] [Abstract][Full Text] [Related]
16. Entrapment and structure of an extrahelical guanine attempting to enter the active site of a bacterial DNA glycosylase, MutM.
Qi Y; Spong MC; Nam K; Karplus M; Verdine GL
J Biol Chem; 2010 Jan; 285(2):1468-78. PubMed ID: 19889642
[TBL] [Abstract][Full Text] [Related]
17. Pre-steady-state kinetic study of substrate specificity of Escherichia coli formamidopyrimidine--DNA glycosylase.
Kuznetsov NA; Koval VV; Zharkov DO; Vorobjev YN; Nevinsky GA; Douglas KT; Fedorova OS
Biochemistry; 2007 Jan; 46(2):424-35. PubMed ID: 17209553
[TBL] [Abstract][Full Text] [Related]
18. Solution-state NMR investigation of DNA binding interactions in Escherichia coli formamidopyrimidine-DNA glycosylase (Fpg): a dynamic description of the DNA/protein interface.
Buchko GW; McAteer K; Wallace SS; Kennedy MA
DNA Repair (Amst); 2005 Mar; 4(3):327-39. PubMed ID: 15661656
[TBL] [Abstract][Full Text] [Related]
19. The nucleoid-associated protein HU enhances 8-oxoguanine base excision by the formamidopyrimidine-DNA glycosylase.
Le Meur R; Culard F; Nadan V; Goffinont S; Coste F; Guerin M; Loth K; Landon C; Castaing B
Biochem J; 2015 Oct; 471(1):13-23. PubMed ID: 26392572
[TBL] [Abstract][Full Text] [Related]
20. Active destabilization of base pairs by a DNA glycosylase wedge initiates damage recognition.
Kuznetsov NA; Bergonzo C; Campbell AJ; Li H; Mechetin GV; de los Santos C; Grollman AP; Fedorova OS; Zharkov DO; Simmerling C
Nucleic Acids Res; 2015 Jan; 43(1):272-81. PubMed ID: 25520195
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]