401 related articles for article (PubMed ID: 16954144)
1. SEBINI: Software Environment for BIological Network Inference.
Taylor RC; Shah A; Treatman C; Blevins M
Bioinformatics; 2006 Nov; 22(21):2706-8. PubMed ID: 16954144
[TBL] [Abstract][Full Text] [Related]
2. Biological Network Inference and analysis using SEBINI and CABIN.
Taylor R; Singhal M
Methods Mol Biol; 2009; 541():551-76. PubMed ID: 19381531
[TBL] [Abstract][Full Text] [Related]
3. SBML-PET: a Systems Biology Markup Language-based parameter estimation tool.
Zi Z; Klipp E
Bioinformatics; 2006 Nov; 22(21):2704-5. PubMed ID: 16926221
[TBL] [Abstract][Full Text] [Related]
4. jSquid: a Java applet for graphical on-line network exploration.
Klammer M; Roopra S; Sonnhammer EL
Bioinformatics; 2008 Jun; 24(12):1467-8. PubMed ID: 18445606
[TBL] [Abstract][Full Text] [Related]
5. A network inference workflow applied to virulence-related processes in Salmonella typhimurium.
Taylor RC; Singhal M; Weller J; Khoshnevis S; Shi L; McDermott J
Ann N Y Acad Sci; 2009 Mar; 1158():143-58. PubMed ID: 19348639
[TBL] [Abstract][Full Text] [Related]
6. BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks.
Zinovyev A; Viara E; Calzone L; Barillot E
Bioinformatics; 2008 Mar; 24(6):876-7. PubMed ID: 18024474
[TBL] [Abstract][Full Text] [Related]
7. SBMLToolbox: an SBML toolbox for MATLAB users.
Keating SM; Bornstein BJ; Finney A; Hucka M
Bioinformatics; 2006 May; 22(10):1275-7. PubMed ID: 16574696
[TBL] [Abstract][Full Text] [Related]
8. Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation.
Barsky A; Gardy JL; Hancock RE; Munzner T
Bioinformatics; 2007 Apr; 23(8):1040-2. PubMed ID: 17309895
[TBL] [Abstract][Full Text] [Related]
9. NetMatch: a Cytoscape plugin for searching biological networks.
Ferro A; Giugno R; Pigola G; Pulvirenti A; Skripin D; Bader GD; Shasha D
Bioinformatics; 2007 Apr; 23(7):910-2. PubMed ID: 17277332
[TBL] [Abstract][Full Text] [Related]
10. Selective integration of multiple biological data for supervised network inference.
Kato T; Tsuda K; Asai K
Bioinformatics; 2005 May; 21(10):2488-95. PubMed ID: 15728114
[TBL] [Abstract][Full Text] [Related]
11. Stochastic simulation GUI for biochemical networks.
Vallabhajosyula RR; Sauro HM
Bioinformatics; 2007 Jul; 23(14):1859-61. PubMed ID: 17586553
[TBL] [Abstract][Full Text] [Related]
12. Supporting the SBML layout extension.
Deckard A; Bergmann FT; Sauro HM
Bioinformatics; 2006 Dec; 22(23):2966-7. PubMed ID: 17038346
[TBL] [Abstract][Full Text] [Related]
13. WebCell: a web-based environment for kinetic modeling and dynamic simulation of cellular networks.
Lee DY; Yun C; Cho A; Hou BK; Park S; Lee SY
Bioinformatics; 2006 May; 22(9):1150-1. PubMed ID: 16543278
[TBL] [Abstract][Full Text] [Related]
14. BioLingua: a programmable knowledge environment for biologists.
Massar JP; Travers M; Elhai J; Shrager J
Bioinformatics; 2005 Jan; 21(2):199-207. PubMed ID: 15308539
[TBL] [Abstract][Full Text] [Related]
15. SYCAMORE--a systems biology computational analysis and modeling research environment.
Weidemann A; Richter S; Stein M; Sahle S; Gauges R; Gabdoulline R; Surovtsova I; Semmelrock N; Besson B; Rojas I; Wade R; Kummer U
Bioinformatics; 2008 Jun; 24(12):1463-4. PubMed ID: 18463116
[TBL] [Abstract][Full Text] [Related]
16. Automated manipulation of systems biology models using libSBML within Taverna workflows.
Li P; Oinn T; Soiland S; Kell DB
Bioinformatics; 2008 Jan; 24(2):287-9. PubMed ID: 18056069
[TBL] [Abstract][Full Text] [Related]
17. BioBayes: a software package for Bayesian inference in systems biology.
Vyshemirsky V; Girolami M
Bioinformatics; 2008 Sep; 24(17):1933-4. PubMed ID: 18632751
[TBL] [Abstract][Full Text] [Related]
18. The SBW-MATLAB interface.
Wellock C; Chickarmane V; Sauro HM
Bioinformatics; 2005 Mar; 21(6):823-4. PubMed ID: 15531613
[TBL] [Abstract][Full Text] [Related]
19. BioNetBuilder: automatic integration of biological networks.
Avila-Campillo I; Drew K; Lin J; Reiss DJ; Bonneau R
Bioinformatics; 2007 Feb; 23(3):392-3. PubMed ID: 17138585
[TBL] [Abstract][Full Text] [Related]
20. An application programming interface for CellNetAnalyzer.
Klamt S; von Kamp A
Biosystems; 2011 Aug; 105(2):162-8. PubMed ID: 21315797
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
