BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

61 related articles for article (PubMed ID: 16957337)

  • 1. Multiple sequence alignment as a guideline for protein engineering strategies.
    Davidson AR
    Methods Mol Biol; 2006; 340():171-81. PubMed ID: 16957337
    [TBL] [Abstract][Full Text] [Related]  

  • 2. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
    Yang AS; Honig B
    J Mol Biol; 2000 Aug; 301(3):691-711. PubMed ID: 10966778
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design.
    Georgiev I; Lilien RH; Donald BR
    Bioinformatics; 2006 Jul; 22(14):e174-83. PubMed ID: 16873469
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Sequence search methods and scoring functions for the design of protein structures.
    Madaoui H; Becker E; Guerois R
    Methods Mol Biol; 2006; 340():183-206. PubMed ID: 16957338
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Predicting protein secondary structure by cascade-correlation neural networks.
    Wood MJ; Hirst JD
    Bioinformatics; 2004 Feb; 20(3):419-20. PubMed ID: 14960469
    [TBL] [Abstract][Full Text] [Related]  

  • 6. FORTE: a profile-profile comparison tool for protein fold recognition.
    Tomii K; Akiyama Y
    Bioinformatics; 2004 Mar; 20(4):594-5. PubMed ID: 14764565
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A new progressive-iterative algorithm for multiple structure alignment.
    Lupyan D; Leo-Macias A; Ortiz AR
    Bioinformatics; 2005 Aug; 21(15):3255-63. PubMed ID: 15941743
    [TBL] [Abstract][Full Text] [Related]  

  • 8. One-Block CYRCA: an automated procedure for identifying multiple-block alignments from single block queries.
    Frenkel-Morgenstern M; Singer A; Bronfeld H; Pietrokovski S
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W281-3. PubMed ID: 15980470
    [TBL] [Abstract][Full Text] [Related]  

  • 9. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
    Bininda-Emonds OR
    BMC Bioinformatics; 2005 Jun; 6():156. PubMed ID: 15969769
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Engineering proteinase K using machine learning and synthetic genes.
    Liao J; Warmuth MK; Govindarajan S; Ness JE; Wang RP; Gustafsson C; Minshull J
    BMC Biotechnol; 2007 Mar; 7():16. PubMed ID: 17386103
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Multiple mapping method: a novel approach to the sequence-to-structure alignment problem in comparative protein structure modeling.
    Rai BK; Fiser A
    Proteins; 2006 May; 63(3):644-61. PubMed ID: 16437570
    [TBL] [Abstract][Full Text] [Related]  

  • 12. IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content.
    Dosztányi Z; Csizmok V; Tompa P; Simon I
    Bioinformatics; 2005 Aug; 21(16):3433-4. PubMed ID: 15955779
    [TBL] [Abstract][Full Text] [Related]  

  • 13. HCPM--program for hierarchical clustering of protein models.
    Gront D; Kolinski A
    Bioinformatics; 2005 Jul; 21(14):3179-80. PubMed ID: 15840705
    [TBL] [Abstract][Full Text] [Related]  

  • 14. MISFITS: evaluating the goodness of fit between a phylogenetic model and an alignment.
    Nguyen MA; Klaere S; von Haeseler A
    Mol Biol Evol; 2011 Jan; 28(1):143-52. PubMed ID: 20643866
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Consensus design as a tool for engineering repeat proteins.
    Kajander T; Cortajarena AL; Regan L
    Methods Mol Biol; 2006; 340():151-70. PubMed ID: 16957336
    [TBL] [Abstract][Full Text] [Related]  

  • 16. State-of-the-art bioinformatics protein structure prediction tools (Review).
    Pavlopoulou A; Michalopoulos I
    Int J Mol Med; 2011 Sep; 28(3):295-310. PubMed ID: 21617841
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Gaps in structurally similar proteins: towards improvement of multiple sequence alignment.
    Wrabl JO; Grishin NV
    Proteins; 2004 Jan; 54(1):71-87. PubMed ID: 14705025
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A generalized affine gap model significantly improves protein sequence alignment accuracy.
    Zachariah MA; Crooks GE; Holbrook SR; Brenner SE
    Proteins; 2005 Feb; 58(2):329-38. PubMed ID: 15562515
    [TBL] [Abstract][Full Text] [Related]  

  • 19. On distance and similarity in fold space.
    Sippl MJ
    Bioinformatics; 2008 Mar; 24(6):872-3. PubMed ID: 18227113
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PTGL--a web-based database application for protein topologies.
    May P; Barthel S; Koch I
    Bioinformatics; 2004 Nov; 20(17):3277-9. PubMed ID: 15217820
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 4.