These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
3. Avoiding negative populations in explicit Poisson tau-leaping. Cao Y; Gillespie DT; Petzold LR J Chem Phys; 2005 Aug; 123(5):054104. PubMed ID: 16108628 [TBL] [Abstract][Full Text] [Related]
4. K-leap method for accelerating stochastic simulation of coupled chemical reactions. Cai X; Xu Z J Chem Phys; 2007 Feb; 126(7):074102. PubMed ID: 17328588 [TBL] [Abstract][Full Text] [Related]
5. A "partitioned leaping" approach for multiscale modeling of chemical reaction dynamics. Harris LA; Clancy P J Chem Phys; 2006 Oct; 125(14):144107. PubMed ID: 17042579 [TBL] [Abstract][Full Text] [Related]
6. Binomial leap methods for simulating stochastic chemical kinetics. Tian T; Burrage K J Chem Phys; 2004 Dec; 121(21):10356-64. PubMed ID: 15549913 [TBL] [Abstract][Full Text] [Related]
7. Look before you leap: a confidence-based method for selecting species criticality while avoiding negative populations in τ-leaping. Yates CA; Burrage K J Chem Phys; 2011 Feb; 134(8):084109. PubMed ID: 21361529 [TBL] [Abstract][Full Text] [Related]
8. A partial-propensity variant of the composition-rejection stochastic simulation algorithm for chemical reaction networks. Ramaswamy R; Sbalzarini IF J Chem Phys; 2010 Jan; 132(4):044102. PubMed ID: 20113014 [TBL] [Abstract][Full Text] [Related]
9. Accurate implementation of leaping in space: the spatial partitioned-leaping algorithm. Iyengar KA; Harris LA; Clancy P J Chem Phys; 2010 Mar; 132(9):094101. PubMed ID: 20210383 [TBL] [Abstract][Full Text] [Related]
10. S-Leaping: An Adaptive, Accelerated Stochastic Simulation Algorithm, Bridging [Formula: see text]-Leaping and R-Leaping. Lipková J; Arampatzis G; Chatelain P; Menze B; Koumoutsakos P Bull Math Biol; 2019 Aug; 81(8):3074-3096. PubMed ID: 29992453 [TBL] [Abstract][Full Text] [Related]
17. Improved delay-leaping simulation algorithm for biochemical reaction systems with delays. Yi N; Zhuang G; Da L; Wang Y J Chem Phys; 2012 Apr; 136(14):144108. PubMed ID: 22502502 [TBL] [Abstract][Full Text] [Related]
18. The numerical stability of leaping methods for stochastic simulation of chemically reacting systems. Cao Y; Petzold LR; Rathinam M; Gillespie DT J Chem Phys; 2004 Dec; 121(24):12169-78. PubMed ID: 15606235 [TBL] [Abstract][Full Text] [Related]
19. Accelerated stochastic simulation algorithm for coupled chemical reactions with delays. Zhou W; Peng X; Yan Z; Wang Y Comput Biol Chem; 2008 Aug; 32(4):240-2. PubMed ID: 18467179 [TBL] [Abstract][Full Text] [Related]
20. Quantifying stochastic effects in biochemical reaction networks using partitioned leaping. Harris LA; Piccirilli AM; Majusiak ER; Clancy P Phys Rev E Stat Nonlin Soft Matter Phys; 2009 May; 79(5 Pt 1):051906. PubMed ID: 19518479 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]