BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

195 related articles for article (PubMed ID: 16980320)

  • 21. A discriminative model for identifying spatial cis-regulatory modules.
    Segal E; Sharan R
    J Comput Biol; 2005; 12(6):822-34. PubMed ID: 16108719
    [TBL] [Abstract][Full Text] [Related]  

  • 22. JASPAR: an open-access database for eukaryotic transcription factor binding profiles.
    Sandelin A; Alkema W; Engström P; Wasserman WW; Lenhard B
    Nucleic Acids Res; 2004 Jan; 32(Database issue):D91-4. PubMed ID: 14681366
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Selective constraints in experimentally defined primate regulatory regions.
    Gaffney DJ; Blekhman R; Majewski J
    PLoS Genet; 2008 Aug; 4(8):e1000157. PubMed ID: 18704158
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Identification of altered cis-regulatory elements in human disease.
    Mathelier A; Shi W; Wasserman WW
    Trends Genet; 2015 Feb; 31(2):67-76. PubMed ID: 25637093
    [TBL] [Abstract][Full Text] [Related]  

  • 25. TRED: a Transcriptional Regulatory Element Database and a platform for in silico gene regulation studies.
    Zhao F; Xuan Z; Liu L; Zhang MQ
    Nucleic Acids Res; 2005 Jan; 33(Database issue):D103-7. PubMed ID: 15608156
    [TBL] [Abstract][Full Text] [Related]  

  • 26. rVISTA 2.0: evolutionary analysis of transcription factor binding sites.
    Loots GG; Ovcharenko I
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W217-21. PubMed ID: 15215384
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules.
    Turatsinze JV; Thomas-Chollier M; Defrance M; van Helden J
    Nat Protoc; 2008; 3(10):1578-88. PubMed ID: 18802439
    [TBL] [Abstract][Full Text] [Related]  

  • 28. CisMiner: genome-wide in-silico cis-regulatory module prediction by fuzzy itemset mining.
    Navarro C; Lopez FJ; Cano C; Garcia-Alcalde F; Blanco A
    PLoS One; 2014; 9(9):e108065. PubMed ID: 25268582
    [TBL] [Abstract][Full Text] [Related]  

  • 29. MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data.
    Sun H; Palaniswamy SK; Pohar TT; Jin VX; Huang TH; Davuluri RV
    Nucleic Acids Res; 2006 Jan; 34(Database issue):D98-103. PubMed ID: 16381984
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Tractor_DB (version 2.0): a database of regulatory interactions in gamma-proteobacterial genomes.
    Pérez AG; Angarica VE; Vasconcelos AT; Collado-Vides J
    Nucleic Acids Res; 2007 Jan; 35(Database issue):D132-6. PubMed ID: 17088283
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome.
    Berman BP; Nibu Y; Pfeiffer BD; Tomancak P; Celniker SE; Levine M; Rubin GM; Eisen MB
    Proc Natl Acad Sci U S A; 2002 Jan; 99(2):757-62. PubMed ID: 11805330
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Clusters of regulatory signals for RNA polymerase II transcription associated with Alu family repeats and CpG islands in human promoters.
    Oei SL; Babich VS; Kazakov VI; Usmanova NM; Kropotov AV; Tomilin NV
    Genomics; 2004 May; 83(5):873-82. PubMed ID: 15081116
    [TBL] [Abstract][Full Text] [Related]  

  • 33. A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites.
    Khoueiry P; Rothbächer U; Ohtsuka Y; Daian F; Frangulian E; Roure A; Dubchak I; Lemaire P
    Curr Biol; 2010 May; 20(9):792-802. PubMed ID: 20434338
    [TBL] [Abstract][Full Text] [Related]  

  • 34. A map of cis-regulatory modules and constituent transcription factor binding sites in 80% of the mouse genome.
    Ni P; Wilson D; Su Z
    BMC Genomics; 2022 Oct; 23(1):714. PubMed ID: 36261804
    [TBL] [Abstract][Full Text] [Related]  

  • 35. FactorY, a bioinformatic resource for genome-wide promoter analysis.
    Guruceaga E; Segura V; Corrales FJ; Rubio A
    Comput Biol Med; 2009 Apr; 39(4):385-7. PubMed ID: 19272592
    [TBL] [Abstract][Full Text] [Related]  

  • 36. GTRD: a database of transcription factor binding sites identified by ChIP-seq experiments.
    Yevshin I; Sharipov R; Valeev T; Kel A; Kolpakov F
    Nucleic Acids Res; 2017 Jan; 45(D1):D61-D67. PubMed ID: 27924024
    [TBL] [Abstract][Full Text] [Related]  

  • 37. AtPAN: an integrated system for reconstructing transcriptional regulatory networks in Arabidopsis thaliana.
    Chen YA; Wen YC; Chang WC
    BMC Genomics; 2012 Mar; 13():85. PubMed ID: 22397531
    [TBL] [Abstract][Full Text] [Related]  

  • 38. ECRbase: database of evolutionary conserved regions, promoters, and transcription factor binding sites in vertebrate genomes.
    Loots G; Ovcharenko I
    Bioinformatics; 2007 Jan; 23(1):122-4. PubMed ID: 17090579
    [TBL] [Abstract][Full Text] [Related]  

  • 39. A computation to integrate the analysis of genetic variations occurring within regulatory elements and their possible effects.
    Wu LC; Horng JT; Chen YA
    J Comput Biol; 2009 Dec; 16(12):1731-47. PubMed ID: 20047494
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers.
    Gotea V; Visel A; Westlund JM; Nobrega MA; Pennacchio LA; Ovcharenko I
    Genome Res; 2010 May; 20(5):565-77. PubMed ID: 20363979
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.