BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

541 related articles for article (PubMed ID: 16998473)

  • 1. Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities.
    Berger MF; Philippakis AA; Qureshi AM; He FS; Estep PW; Bulyk ML
    Nat Biotechnol; 2006 Nov; 24(11):1429-35. PubMed ID: 16998473
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Design of compact, universal DNA microarrays for protein binding microarray experiments.
    Philippakis AA; Qureshi AM; Berger MF; Bulyk ML
    J Comput Biol; 2008 Sep; 15(7):655-65. PubMed ID: 18651798
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Improved protein-binding microarrays for the identification of DNA-binding specificities of transcription factors.
    Godoy M; Franco-Zorrilla JM; Pérez-Pérez J; Oliveros JC; Lorenzo O; Solano R
    Plant J; 2011 May; 66(4):700-11. PubMed ID: 21284757
    [TBL] [Abstract][Full Text] [Related]  

  • 4. High-resolution DNA-binding specificity analysis of yeast transcription factors.
    Zhu C; Byers KJ; McCord RP; Shi Z; Berger MF; Newburger DE; Saulrieta K; Smith Z; Shah MV; Radhakrishnan M; Philippakis AA; Hu Y; De Masi F; Pacek M; Rolfs A; Murthy T; Labaer J; Bulyk ML
    Genome Res; 2009 Apr; 19(4):556-66. PubMed ID: 19158363
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors.
    Berger MF; Bulyk ML
    Nat Protoc; 2009; 4(3):393-411. PubMed ID: 19265799
    [TBL] [Abstract][Full Text] [Related]  

  • 6. UniPROBE: an online database of protein binding microarray data on protein-DNA interactions.
    Newburger DE; Bulyk ML
    Nucleic Acids Res; 2009 Jan; 37(Database issue):D77-82. PubMed ID: 18842628
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Design of a combinatorial DNA microarray for protein-DNA interaction studies.
    Mintseris J; Eisen MB
    BMC Bioinformatics; 2006 Oct; 7():429. PubMed ID: 17018151
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Protein binding microarrays (PBMs) for rapid, high-throughput characterization of the sequence specificities of DNA binding proteins.
    Berger MF; Bulyk ML
    Methods Mol Biol; 2006; 338():245-60. PubMed ID: 16888363
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights.
    Gordân R; Murphy KF; McCord RP; Zhu C; Vedenko A; Bulyk ML
    Genome Biol; 2011 Dec; 12(12):R125. PubMed ID: 22189060
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Quantitative modeling of transcription factor binding specificities using DNA shape.
    Zhou T; Shen N; Yang L; Abe N; Horton J; Mann RS; Bussemaker HJ; Gordân R; Rohs R
    Proc Natl Acad Sci U S A; 2015 Apr; 112(15):4654-9. PubMed ID: 25775564
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors.
    Bulyk ML; Johnson PL; Church GM
    Nucleic Acids Res; 2002 Mar; 30(5):1255-61. PubMed ID: 11861919
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Comprehensive, high-resolution binding energy landscapes reveal context dependencies of transcription factor binding.
    Le DD; Shimko TC; Aditham AK; Keys AM; Longwell SA; Orenstein Y; Fordyce PM
    Proc Natl Acad Sci U S A; 2018 Apr; 115(16):E3702-E3711. PubMed ID: 29588420
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The Caenorhabditis elegans heterochronic regulator LIN-14 is a novel transcription factor that controls the developmental timing of transcription from the insulin/insulin-like growth factor gene ins-33 by direct DNA binding.
    Hristova M; Birse D; Hong Y; Ambros V
    Mol Cell Biol; 2005 Dec; 25(24):11059-72. PubMed ID: 16314527
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The GCN4 bZIP can bind to noncognate gene regulatory sequences.
    Fedorova AV; Chan IS; Shin JA
    Biochim Biophys Acta; 2006 Jul; 1764(7):1252-9. PubMed ID: 16784907
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Chromatin immunoprecipitation and multiplex sequencing (ChIP-Seq) to identify global transcription factor binding sites in the nematode Caenorhabditis elegans.
    Brdlik CM; Niu W; Snyder M
    Methods Enzymol; 2014; 539():89-111. PubMed ID: 24581441
    [TBL] [Abstract][Full Text] [Related]  

  • 16. An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments.
    Liu XS; Brutlag DL; Liu JS
    Nat Biotechnol; 2002 Aug; 20(8):835-9. PubMed ID: 12101404
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Ab initio prediction of transcription factor binding sites.
    Liu LA; Bader JS
    Pac Symp Biocomput; 2007; ():484-95. PubMed ID: 17990512
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Protein interaction surface of the POU transcription factor UNC-86 selectively used in touch neurons.
    Röhrig S; Röckelein I; Donhauser R; Baumeister R
    EMBO J; 2000 Jul; 19(14):3694-703. PubMed ID: 10899123
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A systems approach to measuring the binding energy landscapes of transcription factors.
    Maerkl SJ; Quake SR
    Science; 2007 Jan; 315(5809):233-7. PubMed ID: 17218526
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Solution structure of CEH-37 homeodomain of the nematode Caenorhabditis elegans.
    Moon S; Lee YW; Kim WT; Lee W
    Biochem Biophys Res Commun; 2014 Jan; 443(2):370-5. PubMed ID: 24361878
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 28.