BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

142 related articles for article (PubMed ID: 17018151)

  • 1. Design of a combinatorial DNA microarray for protein-DNA interaction studies.
    Mintseris J; Eisen MB
    BMC Bioinformatics; 2006 Oct; 7():429. PubMed ID: 17018151
    [TBL] [Abstract][Full Text] [Related]  

  • 2. An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments.
    Liu XS; Brutlag DL; Liu JS
    Nat Biotechnol; 2002 Aug; 20(8):835-9. PubMed ID: 12101404
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy.
    Hu G; Llinás M; Li J; Preiser PR; Bozdech Z
    BMC Bioinformatics; 2007 Sep; 8():350. PubMed ID: 17880708
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Proof of concept for microarray-based detection of DNA-binding oncogenes in cell extracts.
    Egener T; Roulet E; Zehnder M; Bucher P; Mermod N
    Nucleic Acids Res; 2005 May; 33(8):e79. PubMed ID: 15891112
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Assessing transcription factor motif drift from noisy decoy sequences.
    Reddy TE; DeLisi C; Shakhnovich BE
    Genome Inform; 2005; 16(1):59-67. PubMed ID: 16362907
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A Gibbs sampler for the identification of gene expression and network connectivity consistency.
    Brynildsen MP; Tran LM; Liao JC
    Bioinformatics; 2006 Dec; 22(24):3040-6. PubMed ID: 17060361
    [TBL] [Abstract][Full Text] [Related]  

  • 7. High-resolution computational models of genome binding events.
    Qi Y; Rolfe A; MacIsaac KD; Gerber GK; Pokholok D; Zeitlinger J; Danford T; Dowell RD; Fraenkel E; Jaakkola TS; Young RA; Gifford DK
    Nat Biotechnol; 2006 Aug; 24(8):963-70. PubMed ID: 16900145
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The distribution and deposition algorithm for multiple oligo nucleotide arrays.
    Ning K; Leong HW
    Genome Inform; 2006; 17(2):89-99. PubMed ID: 17503382
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A systems approach to measuring the binding energy landscapes of transcription factors.
    Maerkl SJ; Quake SR
    Science; 2007 Jan; 315(5809):233-7. PubMed ID: 17218526
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A novel computational approach to predict transcription factor DNA binding preference.
    Cai Y; He J; Li X; Lu L; Yang X; Feng K; Lu W; Kong X
    J Proteome Res; 2009 Feb; 8(2):999-1003. PubMed ID: 19099508
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Highly sequence-specific binding is retained within the DNA-binding domain of the Saccharomyces castellii Cdc13 telomere-binding protein.
    Rhodin Edsö J; Tati R; Cohn M
    FEMS Yeast Res; 2008 Dec; 8(8):1289-302. PubMed ID: 18759744
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Toward an atomistic model for predicting transcription-factor binding sites.
    Endres RG; Schulthess TC; Wingreen NS
    Proteins; 2004 Nov; 57(2):262-8. PubMed ID: 15340913
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Statistical methods to infer cooperative binding among transcription factors in Saccharomyces cerevisiae.
    Datta D; Zhao H
    Bioinformatics; 2008 Feb; 24(4):545-52. PubMed ID: 17989095
    [TBL] [Abstract][Full Text] [Related]  

  • 14. DNA breaks are masked by multiple Rap1 binding in yeast: implications for telomere capping and telomerase regulation.
    Negrini S; Ribaud V; Bianchi A; Shore D
    Genes Dev; 2007 Feb; 21(3):292-302. PubMed ID: 17289918
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Divergence of transcription factor binding sites across related yeast species.
    Borneman AR; Gianoulis TA; Zhang ZD; Yu H; Rozowsky J; Seringhaus MR; Wang LY; Gerstein M; Snyder M
    Science; 2007 Aug; 317(5839):815-9. PubMed ID: 17690298
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Label free analysis of transcription factors using microcantilever arrays.
    Huber F; Hegner M; Gerber C; Güntherodt HJ; Lang HP
    Biosens Bioelectron; 2006 Feb; 21(8):1599-605. PubMed ID: 16137876
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Constrained binding site diversity within families of transcription factors enhances pattern discovery bioinformatics.
    Sandelin A; Wasserman WW
    J Mol Biol; 2004 Apr; 338(2):207-15. PubMed ID: 15066426
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Eukaryotic transcription factor binding sites--modeling and integrative search methods.
    Hannenhalli S
    Bioinformatics; 2008 Jun; 24(11):1325-31. PubMed ID: 18426806
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Using DNA duplex stability information for transcription factor binding site discovery.
    Gordân R; Hartemink AJ
    Pac Symp Biocomput; 2008; ():453-64. PubMed ID: 18229707
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Ab initio prediction of transcription factor binding sites.
    Liu LA; Bader JS
    Pac Symp Biocomput; 2007; ():484-95. PubMed ID: 17990512
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.