These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

250 related articles for article (PubMed ID: 17020924)

  • 1. Structural analysis of aligned RNAs.
    Voss B
    Nucleic Acids Res; 2006; 34(19):5471-81. PubMed ID: 17020924
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A local multiple alignment method for detection of non-coding RNA sequences.
    Tabei Y; Asai K
    Bioinformatics; 2009 Jun; 25(12):1498-505. PubMed ID: 19376823
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Abstract shapes of RNA.
    Giegerich R; Voss B; Rehmsmeier M
    Nucleic Acids Res; 2004; 32(16):4843-51. PubMed ID: 15371549
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing.
    Lindgreen S; Gardner PP; Krogh A
    Bioinformatics; 2007 Dec; 23(24):3304-11. PubMed ID: 18006551
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Energy-based RNA consensus secondary structure prediction in multiple sequence alignments.
    Washietl S; Bernhart SH; Kellis M
    Methods Mol Biol; 2014; 1097():125-41. PubMed ID: 24639158
    [TBL] [Abstract][Full Text] [Related]  

  • 6. RNASAlign: RNA structural alignment system.
    Wong TK; Wan KL; Hsu BY; Cheung BW; Hon WK; Lam TW; Yiu SM
    Bioinformatics; 2011 Aug; 27(15):2151-2. PubMed ID: 21659321
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Structural alignment of RNA with triple helix structure.
    Wong TK; Yiu SM
    J Comput Biol; 2012 Apr; 19(4):365-78. PubMed ID: 22468707
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Thermodynamic matchers for the construction of the cuckoo RNA family.
    Reinkensmeier J; Giegerich R
    RNA Biol; 2015; 12(2):197-207. PubMed ID: 25779873
    [TBL] [Abstract][Full Text] [Related]  

  • 9. RNAz 2.0: improved noncoding RNA detection.
    Gruber AR; Findeiß S; Washietl S; Hofacker IL; Stadler PF
    Pac Symp Biocomput; 2010; ():69-79. PubMed ID: 19908359
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Novel representation of RNA secondary structure used to improve prediction algorithms.
    Zou Q; Lin C; Liu XY; Han YP; Li WB; Guo MZ
    Genet Mol Res; 2011 Sep; 10(3):1986-98. PubMed ID: 21948761
    [TBL] [Abstract][Full Text] [Related]  

  • 11. PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences.
    Seemann SE; Richter AS; Gesell T; Backofen R; Gorodkin J
    Bioinformatics; 2011 Jan; 27(2):211-9. PubMed ID: 21088024
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures.
    Saito Y; Sato K; Sakakibara Y
    BMC Bioinformatics; 2011 Feb; 12 Suppl 1(Suppl 1):S48. PubMed ID: 21342580
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Sequence and structure analysis of noncoding RNAs.
    Washietl S
    Methods Mol Biol; 2010; 609():285-306. PubMed ID: 20221926
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Class-specific prediction of ncRNAs.
    Stadler PF
    Methods Mol Biol; 2014; 1097():199-213. PubMed ID: 24639161
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Consensus folding of aligned sequences as a new measure for the detection of functional RNAs by comparative genomics.
    Washietl S; Hofacker IL
    J Mol Biol; 2004 Sep; 342(1):19-30. PubMed ID: 15313604
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change.
    Uzilov AV; Keegan JM; Mathews DH
    BMC Bioinformatics; 2006 Mar; 7():173. PubMed ID: 16566836
    [TBL] [Abstract][Full Text] [Related]  

  • 17. ARTS: alignment of RNA tertiary structures.
    Dror O; Nussinov R; Wolfson H
    Bioinformatics; 2005 Sep; 21 Suppl 2():ii47-53. PubMed ID: 16204124
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Pure multiple RNA secondary structure alignments: a progressive profile approach.
    Höchsmann M; Voss B; Giegerich R
    IEEE/ACM Trans Comput Biol Bioinform; 2004; 1(1):53-62. PubMed ID: 17048408
    [TBL] [Abstract][Full Text] [Related]  

  • 19. STRAL: progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time.
    Dalli D; Wilm A; Mainz I; Steger G
    Bioinformatics; 2006 Jul; 22(13):1593-9. PubMed ID: 16613908
    [TBL] [Abstract][Full Text] [Related]  

  • 20. RNA secondary structure prediction based on free energy and phylogenetic analysis.
    Juan V; Wilson C
    J Mol Biol; 1999 Jun; 289(4):935-47. PubMed ID: 10369773
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.