These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
170 related articles for article (PubMed ID: 17038333)
1. Indirect readout: detection of optimized subsequences and calculation of relative binding affinities using different DNA elastic potentials. Becker NB; Wolff L; Everaers R Nucleic Acids Res; 2006; 34(19):5638-49. PubMed ID: 17038333 [TBL] [Abstract][Full Text] [Related]
2. Indirect readout of DNA sequence by p22 repressor: roles of DNA and protein functional groups in modulating DNA conformation. Harris LA; Watkins D; Williams LD; Koudelka GB J Mol Biol; 2013 Jan; 425(1):133-43. PubMed ID: 23085222 [TBL] [Abstract][Full Text] [Related]
3. P22 c2 repressor-operator complex: mechanisms of direct and indirect readout. Watkins D; Hsiao C; Woods KK; Koudelka GB; Williams LD Biochemistry; 2008 Feb; 47(8):2325-38. PubMed ID: 18237194 [TBL] [Abstract][Full Text] [Related]
4. Specific minor groove solvation is a crucial determinant of DNA binding site recognition. Harris LA; Williams LD; Koudelka GB Nucleic Acids Res; 2014 Dec; 42(22):14053-9. PubMed ID: 25429976 [TBL] [Abstract][Full Text] [Related]
6. Thermodynamics of the interactions of lac repressor with variants of the symmetric lac operator: effects of converting a consensus site to a non-specific site. Frank DE; Saecker RM; Bond JP; Capp MW; Tsodikov OV; Melcher SE; Levandoski MM; Record MT J Mol Biol; 1997 Apr; 267(5):1186-206. PubMed ID: 9150406 [TBL] [Abstract][Full Text] [Related]
7. Sequence recognition of DNA by protein-induced conformational transitions. Watkins D; Mohan S; Koudelka GB; Williams LD J Mol Biol; 2010 Mar; 396(4):1145-64. PubMed ID: 20053356 [TBL] [Abstract][Full Text] [Related]
8. Direct and indirect readout in mutant Met repressor-operator complexes. Garvie CW; Phillips SE Structure; 2000 Sep; 8(9):905-14. PubMed ID: 10986458 [TBL] [Abstract][Full Text] [Related]
10. Secondary structure and interaction of phage D108 Ner repressor with a 61-base-pair operator: evidence for altered protein and DNA structures in the complex. Benevides JM; Kukolj G; Autexier C; Aubrey KL; DuBow MS; Thomas GJ Biochemistry; 1994 Sep; 33(35):10701-10. PubMed ID: 8075070 [TBL] [Abstract][Full Text] [Related]
11. Specificity of the Mnt protein determined by binding to randomized operators. Stormo GD; Yoshioka M Proc Natl Acad Sci U S A; 1991 Jul; 88(13):5699-703. PubMed ID: 2062848 [TBL] [Abstract][Full Text] [Related]
12. Crystallographic analysis of Lac repressor bound to natural operator O1. Bell CE; Lewis M J Mol Biol; 2001 Oct; 312(5):921-6. PubMed ID: 11580238 [TBL] [Abstract][Full Text] [Related]
13. Quantitative modeling of DNA-protein interactions: effects of amino acid substitutions on binding specificity of the Mnt repressor. Man TK; Yang JS; Stormo GD Nucleic Acids Res; 2004; 32(13):4026-32. PubMed ID: 15289576 [TBL] [Abstract][Full Text] [Related]
14. Molecular dynamics simulation in solvent of the bacteriophage 434 cI repressor protein DNA binding domain amino acids (R1-69) in complex with its cognate operator (OR1) DNA sequence. Harris LF; Sullivan MR; Popken-Harris PD J Biomol Struct Dyn; 1999 Aug; 17(1):1-17. PubMed ID: 10496417 [TBL] [Abstract][Full Text] [Related]
15. Quantitative specificity of the Mnt repressor. Fields DS; He Y; Al-Uzri AY; Stormo GD J Mol Biol; 1997 Aug; 271(2):178-94. PubMed ID: 9268651 [TBL] [Abstract][Full Text] [Related]
16. Crystal structure of an engineered Cro monomer bound nonspecifically to DNA: possible implications for nonspecific binding by the wild-type protein. Albright RA; Mossing MC; Matthews BW Protein Sci; 1998 Jul; 7(7):1485-94. PubMed ID: 9684880 [TBL] [Abstract][Full Text] [Related]
18. Interactions of Arg2 in the Mnt N-terminal arm with the central and flanking regions of the Mnt operator. Berggrun A; Sauer RT J Mol Biol; 2000 Aug; 301(4):959-73. PubMed ID: 10966798 [TBL] [Abstract][Full Text] [Related]
19. Interaction of lambda cro repressor with synthetic operator OR3 studied by competition binding with minor groove binders. Gursky GV; Surovaya AN; Kurochkin AV; Chernov BK; Volkov SK; Kirpichnikov MP J Biomol Struct Dyn; 1992 Aug; 10(1):15-33. PubMed ID: 1329842 [TBL] [Abstract][Full Text] [Related]
20. The complex between phage 434 repressor DNA-binding domain and operator site OR3: structural differences between consensus and non-consensus half-sites. Rodgers DW; Harrison SC Structure; 1993 Dec; 1(4):227-40. PubMed ID: 8081737 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]